A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 27-Oct-2021 number of released structures: 11731
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NDB ID: PD0822  PDB ID: 2HAN 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11C_DA2:DT20_D0.719-0.249-0.12-0.358-10.149-0.838
12C_DA3:DT19_D-0.095-0.1980.0127.304-10.458-0.123
19C_DA10:DT12_D0.082-0.050.11115.452-19.17-3.591
110C_DA11:DT11_D0.092-0.0670.1414.548-20.7880.713
114C_DA15:DT7_D0.291-0.1280.17316.055-12.7291.675
18C_DC9:DG13_D0.079-0.145-0.2796.5311.436-0.479
113C_DC14:DG8_D0.288-0.1260.08810.413-6.488-2.512
115C_DC16:DG6_D0.311-0.2090.1428.422-18.5263.071
13C_DG4:DC18_D-0.044-0.1360.32818.286-4.9860.096
14C_DG5:DC17_D-0.441-0.2510.1543.602-12.887-0.185
15C_DG6:DC16_D-0.408-0.144-0.161-19.761-23.3572.22
112C_DG13:DC9_D-0.297-0.216-0.157-0.6832.275-3.016
118C_DG19:DC3_D-0.22-0.1030.088-8.223-7.547-2.139
16C_DT7:DA15_D-0.171-0.0730.179-18.511-8.0262.314
17C_DT8:DA14_D-0.12-0.120.027-8.21-8.3813.113
111C_DT12:DA10_D0.091-0.1830.124-5.649-15.0910.395
116C_DT17:DA5_D0.016-0.2950.177-1.336-14.268-0.001
117C_DT18:DA4_D-0.197-0.114-0.046-7.003-14.2531.768
119C_DT20:DA2_D-0.439-0.126-0.055-0.457-6.0860.345

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.