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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 3-Aug-2022 number of released structures: 12227
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NDB ID:
PD0822
PDB ID:
2HAN
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
1
CC_DA2DA3:DT19DT20_DD
-0.145
-0.128
3.071
1.129
0.378
31.067
-0.307
0.473
3.063
0.704
-2.107
31.09
1
2
CC_DA3DG4:DC18DT19_DD
0.664
0.328
3.034
-0.407
1.915
30.809
0.271
-1.322
3.039
3.6
0.765
30.87
1
9
CC_DA10DA11:DT11DT12_DD
0.402
-0.201
3.415
-0.039
0.407
38.053
-0.362
-0.622
3.412
0.625
0.06
38.055
1
10
CC_DA11DT12:DA10DT11_DD
0.402
-0.5
3.5
0.284
-2.866
35.055
-0.368
-0.62
3.532
-4.748
-0.471
35.169
1
14
CC_DA15DC16:DG6DT7_DD
0.641
-1.153
3.371
-1.499
1.663
33.16
-2.299
-1.376
3.279
2.909
2.623
33.233
1
8
CC_DC9DA10:DT12DG13_DD
-1.132
1.617
3.223
-3.966
3.194
35.974
2.137
1.247
3.451
5.14
6.383
36.321
1
13
CC_DC14DA15:DT7DG8_DD
0.799
0.094
3.147
3.662
-0.839
35.492
0.272
-0.788
3.208
-1.372
-5.987
35.684
1
15
CC_DC16DT17:DA5DG6_DD
-0.506
-0.583
3.479
1.431
6.111
36.232
-1.796
1.007
3.318
9.736
-2.28
36.754
1
3
CC_DG4DG5:DC17DC18_DD
-0.007
-0.479
3.505
-0.87
1.379
38.887
-0.898
-0.102
3.486
2.07
1.306
38.92
1
4
CC_DG5DG6:DC16DC17_DD
0.702
-1.406
3.727
2.066
11.745
37.944
-3.555
-0.773
3.202
17.542
-3.085
39.708
1
5
CC_DG6DT7:DA15DC16_DD
-0.366
-1.039
3.24
0.971
1.534
32.863
-2.092
0.809
3.178
2.71
-1.714
32.911
1
12
CC_DG13DC14:DG8DC9_DD
-0.889
0.384
3.102
-2.534
0.144
35.763
0.604
1.096
3.157
0.234
4.12
35.85
1
18
CC_DG19DT20:DA2DC3_DD
-0.224
-0.454
3.066
1.543
4.556
28.709
-1.826
0.759
2.944
9.108
-3.085
29.1
1
6
CC_DT7DT8:DA14DA15_DD
-0.476
-0.386
3.142
2.468
-2.503
32.992
-0.273
1.232
3.119
-4.391
-4.331
33.173
1
7
CC_DT8DC9:DG13DA14_DD
0.889
1.722
3.093
4.014
2.488
35.36
2.458
-0.883
3.28
4.073
-6.571
35.664
1
11
CC_DT12DG13:DC9DA10_DD
0.778
1.102
3.263
4.049
1.008
36.934
1.594
-0.673
3.354
1.585
-6.366
37.16
1
16
CC_DT17DT18:DA4DA5_DD
0.038
-0.188
3.309
2.371
0.218
38.578
-0.311
0.237
3.304
0.33
-3.585
38.649
1
17
CC_DT18DG19:DC3DA4_DD
-0.194
0.168
3.275
-5.044
7.446
34.972
-0.795
-0.41
3.238
12.144
8.226
36.075
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.