2HAN: Base Pair Morphology Step Parameters

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NDB ID: PD0822 PDB ID: 2HAN

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	CC_DA2DA3:DT19DT20_DD	-0.145	-0.128	3.071	1.129	0.378	31.067	-0.307	0.473	3.063	0.704	-2.107	31.09
1	2	CC_DA3DG4:DC18DT19_DD	0.664	0.328	3.034	-0.407	1.915	30.809	0.271	-1.322	3.039	3.6	0.765	30.87
1	9	CC_DA10DA11:DT11DT12_DD	0.402	-0.201	3.415	-0.039	0.407	38.053	-0.362	-0.622	3.412	0.625	0.06	38.055
1	10	CC_DA11DT12:DA10DT11_DD	0.402	-0.5	3.5	0.284	-2.866	35.055	-0.368	-0.62	3.532	-4.748	-0.471	35.169
1	14	CC_DA15DC16:DG6DT7_DD	0.641	-1.153	3.371	-1.499	1.663	33.16	-2.299	-1.376	3.279	2.909	2.623	33.233
1	8	CC_DC9DA10:DT12DG13_DD	-1.132	1.617	3.223	-3.966	3.194	35.974	2.137	1.247	3.451	5.14	6.383	36.321
1	13	CC_DC14DA15:DT7DG8_DD	0.799	0.094	3.147	3.662	-0.839	35.492	0.272	-0.788	3.208	-1.372	-5.987	35.684
1	15	CC_DC16DT17:DA5DG6_DD	-0.506	-0.583	3.479	1.431	6.111	36.232	-1.796	1.007	3.318	9.736	-2.28	36.754
1	3	CC_DG4DG5:DC17DC18_DD	-0.007	-0.479	3.505	-0.87	1.379	38.887	-0.898	-0.102	3.486	2.07	1.306	38.92
1	4	CC_DG5DG6:DC16DC17_DD	0.702	-1.406	3.727	2.066	11.745	37.944	-3.555	-0.773	3.202	17.542	-3.085	39.708
1	5	CC_DG6DT7:DA15DC16_DD	-0.366	-1.039	3.24	0.971	1.534	32.863	-2.092	0.809	3.178	2.71	-1.714	32.911
1	12	CC_DG13DC14:DG8DC9_DD	-0.889	0.384	3.102	-2.534	0.144	35.763	0.604	1.096	3.157	0.234	4.12	35.85
1	18	CC_DG19DT20:DA2DC3_DD	-0.224	-0.454	3.066	1.543	4.556	28.709	-1.826	0.759	2.944	9.108	-3.085	29.1
1	6	CC_DT7DT8:DA14DA15_DD	-0.476	-0.386	3.142	2.468	-2.503	32.992	-0.273	1.232	3.119	-4.391	-4.331	33.173
1	7	CC_DT8DC9:DG13DA14_DD	0.889	1.722	3.093	4.014	2.488	35.36	2.458	-0.883	3.28	4.073	-6.571	35.664
1	11	CC_DT12DG13:DC9DA10_DD	0.778	1.102	3.263	4.049	1.008	36.934	1.594	-0.673	3.354	1.585	-6.366	37.16
1	16	CC_DT17DT18:DA4DA5_DD	0.038	-0.188	3.309	2.371	0.218	38.578	-0.311	0.237	3.304	0.33	-3.585	38.649
1	17	CC_DT18DG19:DC3DA4_DD	-0.194	0.168	3.275	-5.044	7.446	34.972	-0.795	-0.41	3.238	12.144	8.226	36.075

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.