2HO7: Base Pair Morphology Parameters

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As of 25-May-2022 number of released structures: 12098

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NDB ID: UR0097 PDB ID: 2HO7

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	A_A0:G65_B	2.811	7.243	-1.208	38.913	3.153	153.552
1	8	A_A9:U32_B	0.309	-0.166	0.004	18.996	-20.463	-2.792
1	12	A_A13:U28_B	-0.031	-0.119	0.23	3.401	-10.623	3.181
1	13	A_A14:U27_B	0.329	-0.087	0.382	11.7	-13.713	9.146
1	14	A_A15:U26_B	0.267	0.041	0.379	12.664	-3.422	0.107
1	2	A_C2:G64_B	-0.406	0.283	-0.093	3.522	-4.664	6.26
1	4	A_C4:G62_B	0.286	0.076	-0.16	7.083	-9.602	4.366
1	5	A_C5:G61_B	0.78	-0.027	-0.38	4.131	9.364	4.737
1	9	A_C10:G31_B	0.301	-0.316	0.048	5.557	-16.718	4.661
1	16	A_C17:G24_B	1.222	-0.342	-0.05	2.611	-10.662	4.217
1	17	A_C18:G23_B	0.422	-0.139	0.237	-2.812	3.16	7.039
1	3	A_G3:C63_B	-0.728	-0.542	0.099	1.497	-1.327	-5.087
1	6	A_G7:C60_B	0.069	0.097	-0.336	-6.532	-2.146	3.977
1	7	A_G8:U33_B	-1.985	-0.189	0.018	26.506	-9.082	-16.974
1	15	A_G16:C25_B	-0.563	-0.161	-0.019	6.721	-3.414	4.129
1	10	A_U11:A30_B	-0.106	-0.177	0.018	-5.296	-7.462	0.015
1	11	A_U12:A29_B	0.356	-0.339	-0.189	3.685	-10.016	3.666
1	22	B_A50:U48_B	-0.045	-3.415	1.213	-15.957	8.51	58.784
1	21	B_A54:U59_B	0.095	1.082	-0.082	-0.73	7.724	167.647
1	40	B_A95:G137_B	-6.713	-3.676	-0.193	3.054	-4.24	2.87
1	43	B_A98:U134_B	-0.612	-0.053	-0.173	-2.338	-14.953	3.749
1	47	B_A105:U126_B	-3.883	-1.777	0.402	-0.003	1.811	-89.624
1	48	B_A106:A125_B	-4.104	1.119	0.494	10.577	-10.309	-109.818
1	49	B_A107:C124_B	-3.347	-1.107	-1.514	11.705	-30.816	-71.545
1	52	B_A110:U121_B	-0.019	-0.234	0.151	3.156	-4.246	-0.331
1	54	B_A112:U119_B	-0.088	-0.094	-0.013	-0.728	-9.837	0.75
1	36	B_A141:U83_B	-0.129	-0.225	0.132	-3.638	-10.56	2.81
1	39	B_A144:U80_B	0.475	0.155	-0.477	-12.333	-20.903	-2.533
1	19	B_C52:G37_B	0.081	-0.368	0.211	-5.594	-5.877	-0.543
1	24	B_C69:G46_B	0.367	-0.004	-0.138	11.479	-17.828	0.77
1	25	B_C70:G45_B	-0.127	-0.217	0.042	3.952	-8.763	1.053
1	26	B_C71:G44_B	-0.251	-0.06	-0.013	0.648	-9.379	4.214
1	29	B_C74:G90_B	0.148	-0.222	0.222	1.008	-10.799	-1.588
1	33	B_C78:G86_B	0.256	-0.493	0.342	3.531	-6.327	-7.537
1	44	B_C99:G133_B	0.253	-0.473	0.352	-3.218	-16.9	0.35
1	50	B_C108:G123_B	0.009	0.015	-0.515	13.566	-20.493	2.778
1	51	B_C109:G122_B	-0.218	-0.037	-0.301	4.865	-12.797	1.436
1	53	B_C111:G120_B	0.238	-0.395	-0.254	8.982	-16.406	-5.144
1	35	B_C140:G84_B	-0.511	0.021	0.125	-6.527	-6.997	4.589
1	20	B_G53:C36_B	-0.664	-0.179	0.137	6.304	2.296	2.637
1	23	B_G68:U47_B	-2.131	-0.548	0.216	9.328	-8.07	-9.062
1	28	B_G73:C42_B	0.115	-0.164	-0.103	3.62	-9.971	-2.2
1	30	B_G75:C89_B	0.036	-0.01	0.34	-6.063	-22.886	2.873
1	31	B_G76:C88_B	0.008	-0.088	0.265	-2.801	-9.946	-0.021
1	41	B_G96:C136_B	-0.312	0.078	0.232	-2.213	-9.853	10.454
1	42	B_G97:C135_B	-0.742	-0.102	0.104	-3.625	-12.504	6.408
1	46	B_G101:C131_B	-0.108	-0.201	-0.128	-10.437	-17.752	0.765
1	55	B_G113:C118_B	-0.117	0.069	-0.454	-4.015	-2.877	6.194
1	56	B_G114:A117_B	7.768	-5.47	1.282	-0.432	-28.071	-40.804
1	34	B_G139:C85_B	-0.055	-0.163	-0.072	-9.995	-8.456	3.212
1	37	B_G142:C82_B	0.315	-0.352	0.591	6.252	-9.482	-2.45
1	38	B_G143:C81_B	-0.597	-0.379	0.231	0.146	-10.683	-7.308
1	18	B_U51:A38_B	-0.305	-0.382	0.075	0.093	-14.836	2.304
1	27	B_U72:A43_B	-0.186	0.018	0.153	4.839	-12.117	7.864
1	32	B_U77:A87_B	0.15	-0.247	0.024	-0.534	-17.272	-2.269
1	45	B_U100:A132_B	-0.375	-0.217	0.368	-3.168	-9.045	4.655

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.