A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 25-May-2022 number of released structures: 12098
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NDB ID: UR0097  PDB ID: 2HO7 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11A_A0:G65_B2.8117.243-1.20838.9133.153153.552
18A_A9:U32_B0.309-0.1660.00418.996-20.463-2.792
112A_A13:U28_B-0.031-0.1190.233.401-10.6233.181
113A_A14:U27_B0.329-0.0870.38211.7-13.7139.146
114A_A15:U26_B0.2670.0410.37912.664-3.4220.107
12A_C2:G64_B-0.4060.283-0.0933.522-4.6646.26
14A_C4:G62_B0.2860.076-0.167.083-9.6024.366
15A_C5:G61_B0.78-0.027-0.384.1319.3644.737
19A_C10:G31_B0.301-0.3160.0485.557-16.7184.661
116A_C17:G24_B1.222-0.342-0.052.611-10.6624.217
117A_C18:G23_B0.422-0.1390.237-2.8123.167.039
13A_G3:C63_B-0.728-0.5420.0991.497-1.327-5.087
16A_G7:C60_B0.0690.097-0.336-6.532-2.1463.977
17A_G8:U33_B-1.985-0.1890.01826.506-9.082-16.974
115A_G16:C25_B-0.563-0.161-0.0196.721-3.4144.129
110A_U11:A30_B-0.106-0.1770.018-5.296-7.4620.015
111A_U12:A29_B0.356-0.339-0.1893.685-10.0163.666
122B_A50:U48_B-0.045-3.4151.213-15.9578.5158.784
121B_A54:U59_B0.0951.082-0.082-0.737.724167.647
140B_A95:G137_B-6.713-3.676-0.1933.054-4.242.87
143B_A98:U134_B-0.612-0.053-0.173-2.338-14.9533.749
147B_A105:U126_B-3.883-1.7770.402-0.0031.811-89.624
148B_A106:A125_B-4.1041.1190.49410.577-10.309-109.818
149B_A107:C124_B-3.347-1.107-1.51411.705-30.816-71.545
152B_A110:U121_B-0.019-0.2340.1513.156-4.246-0.331
154B_A112:U119_B-0.088-0.094-0.013-0.728-9.8370.75
136B_A141:U83_B-0.129-0.2250.132-3.638-10.562.81
139B_A144:U80_B0.4750.155-0.477-12.333-20.903-2.533
119B_C52:G37_B0.081-0.3680.211-5.594-5.877-0.543
124B_C69:G46_B0.367-0.004-0.13811.479-17.8280.77
125B_C70:G45_B-0.127-0.2170.0423.952-8.7631.053
126B_C71:G44_B-0.251-0.06-0.0130.648-9.3794.214
129B_C74:G90_B0.148-0.2220.2221.008-10.799-1.588
133B_C78:G86_B0.256-0.4930.3423.531-6.327-7.537
144B_C99:G133_B0.253-0.4730.352-3.218-16.90.35
150B_C108:G123_B0.0090.015-0.51513.566-20.4932.778
151B_C109:G122_B-0.218-0.037-0.3014.865-12.7971.436
153B_C111:G120_B0.238-0.395-0.2548.982-16.406-5.144
135B_C140:G84_B-0.5110.0210.125-6.527-6.9974.589
120B_G53:C36_B-0.664-0.1790.1376.3042.2962.637
123B_G68:U47_B-2.131-0.5480.2169.328-8.07-9.062
128B_G73:C42_B0.115-0.164-0.1033.62-9.971-2.2
130B_G75:C89_B0.036-0.010.34-6.063-22.8862.873
131B_G76:C88_B0.008-0.0880.265-2.801-9.946-0.021
141B_G96:C136_B-0.3120.0780.232-2.213-9.85310.454
142B_G97:C135_B-0.742-0.1020.104-3.625-12.5046.408
146B_G101:C131_B-0.108-0.201-0.128-10.437-17.7520.765
155B_G113:C118_B-0.1170.069-0.454-4.015-2.8776.194
156B_G114:A117_B7.768-5.471.282-0.432-28.071-40.804
134B_G139:C85_B-0.055-0.163-0.072-9.995-8.4563.212
137B_G142:C82_B0.315-0.3520.5916.252-9.482-2.45
138B_G143:C81_B-0.597-0.3790.2310.146-10.683-7.308
118B_U51:A38_B-0.305-0.3820.0750.093-14.8362.304
127B_U72:A43_B-0.1860.0180.1534.839-12.1177.864
132B_U77:A87_B0.15-0.2470.024-0.534-17.272-2.269
145B_U100:A132_B-0.375-0.2170.368-3.168-9.0454.655

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.