A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: UR0100  PDB ID: 2HOK 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14A_A12:U87_A0.544-0.3410.109-6.684-6.227-0.705
113A_A35:C24_A-3.137-0.692-0.199-2.02-6.744-22.918
118A_A53:A84_A5.495-5.4080.612-18.99818.271173.424
119A_A56:G83_A-7.171-4.5470.02617.011-14.199-13.1
124A_A61:C77_A-1.8112.266-1.1158.803-20.268111.968
12A_C10:G89_A0.288-0.2510.185-5.064-14.326-0.743
15A_C13:G86_A0.278-0.175-0.2112.722-16.928-0.153
17A_C15:G51_A-0.676-0.06-0.2221.221-10.1444.936
116A_C38:G21_A0.446-0.370.803-16.2752.888-6.848
120A_C57:G82_A1.341-0.1490.116.662-11.345-1.841
121A_C58:G81_A0.747-0.719-0.2242.891-7.312-5.287
125A_C63:G76_A0.782-0.315-0.4369.937-17.810.978
11A_G9:C90_A0.248-0.07-0.267-9.537-17.5373.312
13A_G11:C88_A-0.258-0.386-0.57-12.633-16.3652.986
18A_G16:C50_A0.0960.2220.061-2.549-12.53410.107
19A_G17:C49_A-0.758-0.1340.41-8.44-5.9126.138
110A_G18:C48_A-0.852-0.218-0.208-17.409-16.109-9.582
111A_G19:A47_A0.0811.648-0.622-2.512-15.095-26.685
114A_G36:C23_A-0.69-0.123-0.0954.041-9.2979.301
115A_G37:C22_A-0.793-0.0270.054-5.827-10.04310.492
123A_G60:G78_A1.4773.1390.5-12.4383.587-94.13
127A_G65:C74_A0.6130.089-0.319-8.2113.0784.639
128A_G66:C73_A0.648-0.238-0.214-10.055-3.987-1.114
16A_U14:A85_A-0.5780.240.189-10.873-15.49416.117
112A_U20:A45_A0.619-0.235-1.02326.176-0.523.681
117A_U39:A43_A4.283-1.910.0073.88911.91-91.115
122A_U59:A80_A0.3950.1720.305-23.524-12.7451.157
126A_U64:A75_A-0.140.2680.3935.726-16.0684.45

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.