2HOK: Base Pair Morphology Step Parameters

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NDB ID: UR0100 PDB ID: 2HOK

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	4	AA_A12C13:G86U87_AA	-0.515	-1.605	3.029	1.778	2.201	30.209	-3.468	1.308	2.873	4.211	-3.403	30.338
1	12	AA_A35G36:C23C24_AA	0.891	-1.352	3.26	-2.177	6.166	35.685	-2.998	-1.723	2.935	9.959	3.516	36.26
1	16	AA_A53A56:G83A84_AA	-2.313	-2.121	-0.298	149.718	-82.8	-11.325	1.21	-0.895	0.963	43.343	78.373	-171.132
1	17	AA_A56C57:G82G83_AA	1.253	-0.71	3.734	-3.751	6.149	72.698	-0.821	-1.19	3.614	5.175	3.157	73.005
1	22	AA_A61C63:G76C77_AA	-2.16	-2.88	-1.17	98.699	-134.178	157.547	-1.524	1.019	-0.947	-67.192	-49.425	177.391
1	2	AA_C10G11:C88G89_AA	0.268	-1.684	3.394	5.6	11.52	28.898	-5.137	0.499	2.559	21.783	-10.589	31.554
1	5	AA_C13U14:A85G86_AA	1.22	-0.683	3.464	0.938	5.571	28.628	-2.626	-2.209	3.312	11.129	-1.873	29.168
1	7	AA_C15G16:C50G51_AA	1.282	-1.569	3.283	-2.28	6.702	35.197	-3.457	-2.39	2.86	10.947	3.724	35.88
1	15	AA_C38U39:A43G21_AA	-3.046	-1.233	2.634	15.438	-0.338	65.606	-1.104	3.18	1.962	-0.307	-14.047	67.2
1	18	AA_C57C58:G81G82_AA	-0.793	-2.1	3.238	0.094	3.651	27.538	-5.208	1.673	2.937	7.626	-0.197	27.774
1	19	AA_C58U59:A80G81_AA	0.616	-1.294	3.722	2.845	17.379	40.306	-3.508	-0.535	2.982	23.89	-3.911	43.838
1	23	AA_C63U64:A75G76_AA	0.071	-1.75	3.358	-6.909	5.234	28.567	-4.467	-1.546	2.903	10.311	13.611	29.827
1	1	AA_G9C10:G89C90_AA	-0.323	-0.961	3.154	-6.117	3.161	37.985	-1.829	-0.238	3.081	4.808	9.304	38.581
1	3	AA_G11A12:U87C88_AA	-0.675	-1.008	3.037	-9.715	1.394	34.213	-1.844	-0.245	3.067	2.312	16.107	35.552
1	8	AA_G16G17:C49C50_AA	-0.353	-1.74	3.296	0.076	-0.262	32.338	-3.077	0.647	3.308	-0.47	-0.137	32.339
1	9	AA_G17G18:C48C49_AA	-0.207	-1.941	3.319	8.205	13.858	28.373	-5.592	1.629	2.042	25.812	-15.282	32.544
1	10	AA_G18G19:A47C48_AA	-1.125	-0.767	2.857	6.316	6.745	41.119	-1.647	2.108	2.515	9.459	-8.857	42.101
1	11	AA_G19U20:A45A47_AA	0.316	0.842	2.627	8.572	6.072	10.792	-1.284	5.143	2.405	25.635	-36.191	15.049
1	13	AA_G36G37:C22C23_AA	-0.275	-1.65	3.356	-5.181	8.344	32.907	-4.071	-0.326	2.874	14.337	8.902	34.303
1	14	AA_G37C38:G21C22_AA	-0.682	-1.869	3.488	-3.284	12.504	41.442	-3.746	0.604	2.877	17.174	4.511	43.326
1	21	AA_G60A61:C77G78_AA	2.612	1.753	-1.083	30.856	-165.658	-45.615	-0.998	1.29	0.725	86.282	16.071	-169.408
1	25	AA_G65G66:C73C74_AA	0.155	-2.276	3.348	3.71	-0.79	31.821	-3.977	0.411	3.398	-1.434	-6.737	32.04
1	6	AA_U14C15:G51A85_AA	0.796	-0.235	2.971	2.239	4.271	40.498	-0.766	-0.917	2.97	6.144	-3.22	40.772
1	20	AA_U59G60:G78A80_AA	2.197	-1.985	2.551	10.665	-0.301	88.669	-1.409	-1.386	2.753	-0.214	-7.608	89.175
1	24	AA_U64G65:C74A75_AA	-0.567	-1.46	3.17	0.375	18.075	38.193	-3.672	0.824	2.279	25.926	-0.538	42.111

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.