2HOO: Base Pair Morphology Parameters

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As of 15-Mar-2023 number of released structures: 12686

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NDB ID: UR0103 PDB ID: 2HOO

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	4	A_A12:U87_A	-0.399	-0.196	0.593	2.066	-17.529	-0.723
1	13	A_A35:C24_A	-3.299	-0.774	0.236	6.951	-5.36	-2.019
1	18	A_A53:A84_A	6.472	-5.307	0.241	-22.854	16.584	174.632
1	19	A_A56:G83_A	-6.933	-4.515	0.157	11.266	-10.329	-8.245
1	24	A_A61:C77_A	-1.26	3.24	0.243	9.332	-6.657	110.394
1	2	A_C10:G89_A	0.32	-0.003	0.497	0.442	-3.416	5.446
1	5	A_C13:G86_A	0.408	0.408	1.043	-10.71	-12.297	11.515
1	7	A_C15:G51_A	-0.162	-0.157	0.139	-0.03	-12.955	6.084
1	16	A_C38:G21_A	0.795	-0.047	1.31	-26.821	5.402	-9.44
1	20	A_C57:G82_A	-0.073	-0.169	-0.108	15.083	-14.21	-0.013
1	21	A_C58:G81_A	-0.331	-0.353	-0.243	6.354	-9.057	-1.922
1	25	A_C63:G76_A	-1.946	0.057	-0.235	29.529	-3.58	-2.386
1	1	A_G9:C90_A	0.432	-0.115	0.473	7.446	-8.992	-1.803
1	3	A_G11:C88_A	0.339	-0.142	0.395	2.105	-10.363	2.554
1	8	A_G16:C50_A	-0.312	-0.28	-0.078	-3.638	-15.127	4.564
1	9	A_G17:C49_A	0.021	-0.107	0.245	-10.044	-17.531	4.579
1	10	A_G18:C48_A	-0.494	-0.104	0.55	-3.991	-11.406	-0.815
1	11	A_G19:A47_A	0.606	1.527	-0.16	0.44	-9.712	-20.661
1	14	A_G36:C23_A	-0.653	-0.314	-0.225	-0.858	-14.812	-1.797
1	15	A_G37:C22_A	-0.302	0.03	0.366	3.365	-9.272	5.052
1	23	A_G60:G78_A	1.603	3.666	0.021	-19.401	12.928	-90.134
1	27	A_G65:C74_A	-0.322	-0.355	1.1	1.773	5.24	1.57
1	28	A_G66:C73_A	0.58	-0.168	-0.02	10.134	9.722	3.101
1	6	A_U14:A85_A	-0.299	0.241	1.135	-17.957	-3.455	5.921
1	12	A_U20:A45_A	-0.143	-0.243	0.05	13.405	13.817	14.922
1	17	A_U39:A43_A	3.544	-1.507	0.494	5.626	7.249	-96.638
1	22	A_U59:A80_A	0.92	-0.126	0.918	-7.105	3.643	1.728
1	26	A_U64:A75_A	0.433	0.312	0.201	1.878	-20.687	3.326

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.