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As of 25-May-2022 number of released structures: 12098
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NDB ID: UR0103  PDB ID: 2HOO 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14A_A12:U87_A-0.399-0.1960.5932.066-17.529-0.723
113A_A35:C24_A-3.299-0.7740.2366.951-5.36-2.019
118A_A53:A84_A6.472-5.3070.241-22.85416.584174.632
119A_A56:G83_A-6.933-4.5150.15711.266-10.329-8.245
124A_A61:C77_A-1.263.240.2439.332-6.657110.394
12A_C10:G89_A0.32-0.0030.4970.442-3.4165.446
15A_C13:G86_A0.4080.4081.043-10.71-12.29711.515
17A_C15:G51_A-0.162-0.1570.139-0.03-12.9556.084
116A_C38:G21_A0.795-0.0471.31-26.8215.402-9.44
120A_C57:G82_A-0.073-0.169-0.10815.083-14.21-0.013
121A_C58:G81_A-0.331-0.353-0.2436.354-9.057-1.922
125A_C63:G76_A-1.9460.057-0.23529.529-3.58-2.386
11A_G9:C90_A0.432-0.1150.4737.446-8.992-1.803
13A_G11:C88_A0.339-0.1420.3952.105-10.3632.554
18A_G16:C50_A-0.312-0.28-0.078-3.638-15.1274.564
19A_G17:C49_A0.021-0.1070.245-10.044-17.5314.579
110A_G18:C48_A-0.494-0.1040.55-3.991-11.406-0.815
111A_G19:A47_A0.6061.527-0.160.44-9.712-20.661
114A_G36:C23_A-0.653-0.314-0.225-0.858-14.812-1.797
115A_G37:C22_A-0.3020.030.3663.365-9.2725.052
123A_G60:G78_A1.6033.6660.021-19.40112.928-90.134
127A_G65:C74_A-0.322-0.3551.11.7735.241.57
128A_G66:C73_A0.58-0.168-0.0210.1349.7223.101
16A_U14:A85_A-0.2990.2411.135-17.957-3.4555.921
112A_U20:A45_A-0.143-0.2430.0513.40513.81714.922
117A_U39:A43_A3.544-1.5070.4945.6267.249-96.638
122A_U59:A80_A0.92-0.1260.918-7.1053.6431.728
126A_U64:A75_A0.4330.3120.2011.878-20.6873.326

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.