2HOO: Base Pair Morphology Step Parameters

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NDB ID: UR0103 PDB ID: 2HOO

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	4	AA_A12C13:G86U87_AA	0.28	-1.261	3.43	-2.657	4.006	39.476	-2.332	-0.728	3.267	5.904	3.915	39.756
1	12	AA_A35G36:C23C24_AA	-0.119	-1.79	3.801	-6.01	4.186	37.776	-3.31	-0.668	3.567	6.392	9.177	38.454
1	16	AA_A53A56:G83A84_AA	-2.187	-2.249	0.858	148.422	-81.646	-60.601	1.407	-0.591	1.152	42.086	76.508	-170.848
1	17	AA_A56C57:G82G83_AA	1.076	-0.794	3.351	-1.296	5.769	67.273	-0.939	-1.019	3.262	5.197	1.167	67.502
1	22	AA_A61C63:G76C77_AA	-2.898	-0.809	-1.627	101.888	-134.042	10.1	-1.46	0.656	-1.249	-71.242	-54.152	168.416
1	2	AA_C10G11:C88G89_AA	-0.434	-1.736	2.823	2.949	7.517	31.206	-4.197	1.201	2.304	13.689	-5.369	32.209
1	5	AA_C13U14:A85G86_AA	-0.142	-1.377	3.288	1.318	-3.38	29.21	-1.967	0.569	3.412	-6.67	-2.601	29.43
1	7	AA_C15G16:C50G51_AA	0.983	-1.626	3.189	0.669	10.756	28.899	-4.935	-1.734	2.461	20.666	-1.286	30.803
1	15	AA_C38U39:A43G21_AA	-3.298	-0.915	2.415	12.756	-0.167	64.05	-0.845	3.407	1.803	-0.156	-11.903	65.175
1	18	AA_C57C58:G81G82_AA	-0.429	-2.065	3.481	0.292	7.002	30.854	-5.08	0.841	2.948	12.951	-0.541	31.621
1	19	AA_C58U59:A80G81_AA	1.089	-1.249	3.473	-4.425	6.09	46.331	-2.085	-1.743	3.182	7.681	5.581	46.905
1	23	AA_C63U64:A75G76_AA	0.444	-2.137	4.203	-1.26	9.718	40.869	-4.207	-0.778	3.61	13.681	1.773	41.978
1	1	AA_G9C10:G89C90_AA	0.354	-1.13	3.554	-0.931	1.485	32.759	-2.276	-0.8	3.49	2.63	1.65	32.805
1	3	AA_G11A12:U87C88_AA	0.045	-1.591	2.95	-2.9	6.896	29.286	-4.238	-0.584	2.502	13.366	5.62	30.207
1	8	AA_G16G17:C49C50_AA	-0.569	-1.487	3.266	-1.941	4.935	37.575	-2.903	0.634	3.078	7.614	2.995	37.934
1	9	AA_G17G18:C48C49_AA	-0.237	-1.469	2.982	-1.149	6.102	28.616	-4.053	0.254	2.626	12.164	2.29	29.268
1	10	AA_G18G19:A47C48_AA	-1.323	-0.682	3.164	7.976	5.017	40.658	-1.444	2.632	2.768	7.105	-11.296	41.69
1	11	AA_G19U20:A45A47_AA	0.52	0.303	3.215	-2.234	10.457	3.769	-14.095	-5.972	1.248	69.081	14.758	11.336
1	13	AA_G36G37:C22C23_AA	-0.281	-1.966	2.991	-10.538	2.278	31.901	-3.737	-1.08	2.798	4.005	18.525	33.628
1	14	AA_G37C38:G21C22_AA	-0.584	-2.104	4.011	-3.734	12.347	44.53	-3.89	0.377	3.38	15.902	4.81	46.269
1	21	AA_G60A61:C77G78_AA	2.981	1.595	-0.228	21.416	-175.202	-63.122	-0.605	1.515	0.922	88.427	10.809	-177.023
1	25	AA_G65G66:C73C74_AA	0.624	-2.257	2.949	10.649	-3.267	37.191	-3.017	0.309	3.182	-4.988	-16.255	38.766
1	6	AA_U14C15:G51A85_AA	1.352	-0.912	2.758	10.279	1.739	40.744	-1.433	-0.939	2.96	2.45	-14.479	42.001
1	20	AA_U59G60:G78A80_AA	2.687	-2.393	2.69	26.982	3.092	92.038	-1.672	-1.381	3.153	2.113	-18.435	95.091
1	24	AA_U64G65:C74A75_AA	-0.343	-1.465	2.913	-7.405	8.729	31.372	-3.779	-0.443	2.445	15.511	13.159	33.346

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.