2HVI: Base Pair Morphology Parameters

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As of 9-Feb-2023 number of released structures: 12635

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NDB ID: PD0845 PDB ID: 2HVI

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	5	B_DA25:DT8_C	0.312	0.053	-0.012	-16.366	-12.35	1.805
1	1	B_DC21:DG12_C	1.524	0.085	0.495	1.108	-39.563	22.549
1	2	B_DC22:DG11_C	-0.192	-0.039	0.604	-9.783	-14.57	-1.375
1	6	B_DC26:DG7_C	0.49	0.0	0.051	-9.77	3.411	5.107
1	8	B_DC28:DG5_C	0.31	-0.13	-0.11	2.806	-8.002	4.392
1	9	B_DDG29:DC4_C	-0.432	-0.073	-0.044	-3.569	-8.628	5.671
1	4	B_DG24:DC9_C	-0.305	-0.205	-0.203	-3.344	-19.939	3.11
1	3	B_DT23:DA10_C	0.006	-0.055	0.092	-5.665	-13.129	-0.03
1	7	B_DT27:DA6_C	0.162	-0.107	0.007	5.138	-5.356	5.41
1	14	E_DA25:DT8_F	0.357	-0.034	-0.055	-15.161	-11.263	2.258
1	10	E_DC21:DG12_F	-0.074	-0.28	0.609	-12.645	-23.521	-0.823
1	11	E_DC22:DG11_F	-0.084	-0.04	0.681	-12.71	-8.299	-1.237
1	15	E_DC26:DG7_F	0.381	-0.056	-0.053	-7.966	3.452	3.945
1	17	E_DC28:DG5_F	0.31	-0.095	-0.168	7.117	-6.227	3.937
1	18	E_DDG29:DC4_F	-0.224	-0.149	-0.051	-3.275	-5.947	3.68
1	13	E_DG24:DC9_F	-0.432	-0.273	-0.185	-3.99	-21.167	2.714
1	12	E_DT23:DA10_F	-0.089	-0.016	0.216	-5.986	-11.437	-3.289
1	16	E_DT27:DA6_F	-0.052	-0.191	-0.155	6.732	-9.597	5.736

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.