2HVI: Base Pair Morphology Step Parameters

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NDB ID: PD0845 PDB ID: 2HVI

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	5	BB_DA25DC26:DG7DT8_CC	0.447	-0.623	3.288	0.444	3.756	33.729	-1.668	-0.695	3.207	6.448	-0.762	33.934
1	1	BB_DC21DC22:DG11DG12_CC	-0.782	-0.287	3.348	0.396	10.249	31.923	-2.204	1.423	3.101	18.06	-0.697	33.489
1	2	BB_DC22DT23:DA10DG11_CC	-0.276	-0.295	3.104	3.143	0.981	36.54	-0.596	0.845	3.061	1.561	-5.001	36.683
1	6	BB_DC26DT27:DA6DG7_CC	0.464	-1.365	3.134	-3.28	7.548	30.698	-3.745	-1.391	2.669	13.945	6.06	31.756
1	8	BB_DC28DDG29:DC4DG5_CC	0.112	-1.354	3.519	-0.346	6.435	28.844	-4.066	-0.296	3.148	12.719	0.685	29.541
1	4	BB_DG24DA25:DT8DC9_CC	-0.154	0.04	3.473	-2.942	-2.71	41.217	0.364	-0.116	3.466	-3.839	4.168	41.402
1	3	BB_DT23DG24:DC9DA10_CC	0.648	0.847	3.367	-0.461	9.958	30.414	-0.391	-1.267	3.456	18.372	0.85	31.969
1	7	BB_DT27DC28:DG5DA6_CC	-0.398	-1.794	3.553	2.75	8.593	24.158	-6.401	1.653	2.704	19.675	-6.296	25.764
1	13	EE_DA25DC26:DG7DT8_FF	0.393	-0.536	3.271	0.469	2.724	32.6	-1.419	-0.618	3.222	4.842	-0.833	32.714
1	9	EE_DC21DC22:DG11DG12_FF	-0.113	-0.498	3.214	1.956	4.652	38.383	-1.308	0.404	3.125	7.039	-2.96	38.701
1	10	EE_DC22DT23:DA10DG11_FF	-0.403	-0.252	3.056	4.334	-0.577	34.693	-0.339	1.278	2.989	-0.963	-7.232	34.959
1	14	EE_DC26DT27:DA6DG7_FF	0.575	-1.227	3.09	-2.176	8.12	30.654	-3.572	-1.406	2.641	15.008	4.022	31.759
1	16	EE_DC28DDG29:DC4DG5_FF	0.225	-1.613	3.624	0.441	7.079	29.357	-4.612	-0.337	3.16	13.718	-0.854	30.183
1	12	EE_DG24DA25:DT8DC9_FF	-0.014	0.085	3.44	-3.104	-0.722	41.357	0.201	-0.327	3.431	-1.021	4.387	41.474
1	11	EE_DT23DG24:DC9DA10_FF	0.694	0.753	3.348	0.861	8.971	32.588	-0.241	-1.046	3.445	15.617	-1.499	33.778
1	15	EE_DT27DC28:DG5DA6_FF	-0.299	-1.686	3.555	0.981	7.676	25.478	-5.7	0.91	2.917	16.915	-2.161	26.609

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.