A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 9-Feb-2023 number of released structures: 12635
Search for released structures

NDB ID: PD0845  PDB ID: 2HVI 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
15BB_DA25DC26:DG7DT8_CC0.447-0.6233.2880.4443.75633.729-1.668-0.6953.2076.448-0.76233.934
11BB_DC21DC22:DG11DG12_CC-0.782-0.2873.3480.39610.24931.923-2.2041.4233.10118.06-0.69733.489
12BB_DC22DT23:DA10DG11_CC-0.276-0.2953.1043.1430.98136.54-0.5960.8453.0611.561-5.00136.683
16BB_DC26DT27:DA6DG7_CC0.464-1.3653.134-3.287.54830.698-3.745-1.3912.66913.9456.0631.756
18BB_DC28DDG29:DC4DG5_CC0.112-1.3543.519-0.3466.43528.844-4.066-0.2963.14812.7190.68529.541
14BB_DG24DA25:DT8DC9_CC-0.1540.043.473-2.942-2.7141.2170.364-0.1163.466-3.8394.16841.402
13BB_DT23DG24:DC9DA10_CC0.6480.8473.367-0.4619.95830.414-0.391-1.2673.45618.3720.8531.969
17BB_DT27DC28:DG5DA6_CC-0.398-1.7943.5532.758.59324.158-6.4011.6532.70419.675-6.29625.764
113EE_DA25DC26:DG7DT8_FF0.393-0.5363.2710.4692.72432.6-1.419-0.6183.2224.842-0.83332.714
19EE_DC21DC22:DG11DG12_FF-0.113-0.4983.2141.9564.65238.383-1.3080.4043.1257.039-2.9638.701
110EE_DC22DT23:DA10DG11_FF-0.403-0.2523.0564.334-0.57734.693-0.3391.2782.989-0.963-7.23234.959
114EE_DC26DT27:DA6DG7_FF0.575-1.2273.09-2.1768.1230.654-3.572-1.4062.64115.0084.02231.759
116EE_DC28DDG29:DC4DG5_FF0.225-1.6133.6240.4417.07929.357-4.612-0.3373.1613.718-0.85430.183
112EE_DG24DA25:DT8DC9_FF-0.0140.0853.44-3.104-0.72241.3570.201-0.3273.431-1.0214.38741.474
111EE_DT23DG24:DC9DA10_FF0.6940.7533.3480.8618.97132.588-0.241-1.0463.44515.617-1.49933.778
115EE_DT27DC28:DG5DA6_FF-0.299-1.6863.5550.9817.67625.478-5.70.912.91716.915-2.16126.609

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.