2I7Z: Base Pair Morphology Step Parameters

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NDB ID: 2I7Z PDB ID: 2I7Z

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	4	AA_A4U5:G39U40_AA	0.939	-0.371	3.744	2.683	1.2	39.912	-0.701	-1.018	3.785	1.756	-3.924	40.015
1	7	AA_A6C35:G8A64_AB	4.316	4.921	-0.443	141.25	38.743	-53.599	-2.094	0.583	-5.04	-21.76	79.334	-150.158
1	26	AB_A21G51:C78A49_BB	4.631	-2.466	4.141	-25.356	17.448	28.694	-4.553	-8.083	-0.88	27.212	39.547	41.842
1	6	AA_A37A6:A64A38_BA	-0.419	3.714	-1.337	-169.387	40.109	-171.624	-1.845	-0.161	-1.425	-20.056	-84.701	-179.567
1	19	AA_C24A23:G20G19_AA	-0.935	0.06	-3.276	0.005	-14.28	-42.071	-1.411	-1.239	-3.099	19.237	0.007	-44.324
1	12	AA_C31U30:A13G12_AA	-0.439	0.826	-3.1	-2.387	-16.582	-33.961	-3.206	-0.401	-2.473	26.484	-3.813	-37.758
1	9	AA_C34U33:A10G9_AA	-0.729	1.726	-4.234	2.299	-2.078	-29.466	-3.932	-2.041	-4.038	4.072	4.503	-29.625
1	8	AA_C35C34:G9G8_AA	1.421	1.269	-3.216	-1.975	-15.866	-35.514	-3.642	2.353	-2.379	24.536	-3.054	-38.841
1	1	AA_G1G2:C42U43_AA	0.137	-1.633	3.329	-4.076	-2.181	29.213	-2.721	-1.162	3.389	-4.291	8.019	29.569
1	2	AA_G2G3:C41C42_AA	0.166	-0.469	4.102	-0.18	9.187	36.933	-2.169	-0.283	3.878	14.234	0.279	38.02
1	3	AA_G3A4:U40C41_AA	-0.026	-0.505	4.021	-1.715	0.949	30.761	-1.177	-0.362	4.0	1.787	3.229	30.822
1	16	AA_G27U26:G17C16_AA	-1.892	0.68	-3.64	-12.183	-6.092	-23.338	-3.371	-0.228	-3.848	13.668	-27.334	-26.975
1	15	AA_G28G27:C16C15_AA	1.448	0.16	-3.555	5.271	-24.798	-33.133	-3.178	1.416	-2.947	37.431	7.957	-41.502
1	5	AA_U5A37:A38G39_AA	-0.752	4.631	-2.379	142.087	84.037	114.315	2.58	-0.06	-1.082	42.62	-72.061	171.924
1	18	AA_U25C24:G19G18_AA	-0.505	1.174	-3.809	0.349	-0.287	-37.734	-1.858	-0.833	-3.795	0.444	0.539	-37.736
1	17	AA_U26U25:G18G17_AA	-0.149	1.916	-3.3	-9.49	-20.051	-28.36	-5.546	0.911	-1.615	34.952	-16.542	-35.864
1	14	AA_U29G28:C15A14_AA	-0.082	0.912	-3.405	2.725	-23.116	-23.449	-5.313	-0.582	-1.804	45.074	5.314	-32.924
1	13	AA_U30U29:A14A13_AA	-0.205	0.445	-3.943	-2.174	-5.945	-29.945	-2.249	0.125	-3.792	11.347	-4.148	-30.592
1	11	AA_U32C31:G12A11_AA	0.018	0.352	-4.149	-0.43	-23.706	-37.444	-3.265	0.074	-3.365	33.178	-0.601	-44.09
1	10	AA_U33U32:A11A10_AA	-0.451	0.92	-3.903	-2.237	12.017	-26.122	1.546	-0.274	-3.959	-24.924	-4.639	-28.796
1	23	BB_A47U48:G82U83_BB	0.896	-0.301	3.77	2.374	11.362	45.278	-1.473	-0.903	3.638	14.479	-3.025	46.667
1	29	BB_A53A54:U75U76_BB	0.162	-0.783	3.942	1.863	1.697	34.034	-1.658	0.079	3.903	2.894	-3.177	34.124
1	30	BB_A54G55:C74U75_BB	-0.773	-0.408	3.728	0.589	16.266	32.173	-3.248	1.345	3.155	27.28	-0.989	35.959
1	32	BB_A56A57:U72U73_BB	-0.37	-0.83	3.879	1.192	15.781	31.385	-4.059	0.817	3.107	27.12	-2.048	35.059
1	33	BB_A57C58:G71U72_BB	0.52	-1.078	3.45	0.978	24.714	24.321	-5.389	-0.735	1.702	46.11	-1.825	34.555
1	25	BA_A80A21:A49A81_BB	-1.475	4.688	-1.273	-162.025	48.942	-87.146	-2.092	0.113	-2.88	-24.952	-82.605	-172.221
1	34	BB_C58C59:G70G71_BB	1.68	-0.393	3.8	6.852	12.386	32.58	-2.82	-1.556	3.684	20.893	-11.557	35.446
1	35	BB_C59G60:U69G70_BB	-1.957	-0.877	3.487	-9.598	11.625	23.81	-4.865	1.501	3.261	25.199	20.805	28.123
1	20	BB_G44G45:C85U86_BB	0.224	-1.756	3.392	-4.116	1.619	26.605	-4.186	-1.548	3.211	3.488	8.865	26.964
1	21	BB_G45G46:C84C85_BB	-0.027	-0.441	4.173	0.112	5.495	37.86	-1.548	0.059	4.071	8.415	-0.172	38.242
1	22	BB_G46A47:U83C84_BB	-0.418	-0.392	3.709	-1.727	12.762	31.451	-2.962	0.407	3.323	22.403	3.032	33.924
1	27	BB_G51G52:C77C78_BB	0.906	-1.336	3.379	0.402	10.227	34.839	-3.551	-1.401	2.895	16.642	-0.655	36.267
1	28	BB_G52A53:U76C77_BB	-0.598	-1.185	4.003	-1.671	6.202	30.763	-3.578	0.731	3.725	11.534	3.107	31.411
1	31	BB_G55A56:U73C74_BB	-0.366	-1.021	3.173	-4.331	11.086	29.126	-3.808	-0.075	2.644	20.974	8.193	31.415
1	36	BB_G60G61:U68U69_BB	-0.296	-1.694	3.453	-6.885	17.404	27.045	-5.772	-0.572	2.039	32.709	12.939	32.791
1	37	BB_G61G62:C67U68_BB	-0.167	-1.251	3.859	-2.474	12.504	34.116	-3.958	-0.118	3.223	20.448	4.045	36.353
1	38	BB_G62G63:A66C67_BB	-0.516	-0.241	3.402	-2.984	8.847	43.148	-1.185	0.396	3.319	11.865	4.002	44.1
1	24	BB_U48A80:A81G82_BB	-0.367	4.407	-2.502	135.761	71.563	120.312	2.453	-0.261	-1.341	36.578	-69.392	166.885

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.