2I91: Base Pair Morphology Parameters

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NDB ID: PR0232 PDB ID: 2I91

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	5	C_A5:U4_D	-0.485	0.004	0.087	-0.641	-8.363	0.102
1	2	C_C2:G7_D	0.513	0.201	-0.843	10.622	-10.39	8.731
1	3	C_C3:G6_D	0.464	-0.338	0.079	0.967	-7.15	-3.931
1	6	C_C6:G3_D	0.736	-0.216	0.006	7.169	-11.903	-3.093
1	7	C_C7:G2_D	1.305	-0.086	0.057	7.509	-18.746	-3.195
1	1	C_G1:C8_D	0.479	0.193	-0.521	8.277	2.345	7.889
1	4	C_U4:A5_D	-0.435	-0.116	-0.011	2.906	-13.327	7.326
1	12	E_A5:U4_F	0.308	-0.066	-0.331	-1.765	-7.244	0.013
1	9	E_C2:G7_F	0.703	-0.125	0.221	-4.281	4.064	9.702
1	10	E_C3:G6_F	0.182	-0.055	-0.516	4.84	-7.186	-0.319
1	13	E_C6:G3_F	0.909	-0.273	0.085	7.358	-17.166	-5.05
1	14	E_C7:G2_F	0.705	0.016	-0.348	8.152	-14.474	-3.041
1	8	E_G1:C8_F	0.388	0.445	0.096	4.607	-0.405	16.218
1	11	E_U4:A5_F	-0.034	0.067	0.064	6.986	-7.373	9.01

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.