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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID:
2IRO
PDB ID:
2IRO
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
5
A_A5:G13_B
-6.597
-4.604
0.042
-22.142
3.49
-1.224
1
2
A_C2:G16_B
0.872
-0.483
-0.71
-10.183
-3.616
4.5
1
8
A_C8:G10_B
0.148
-0.553
-1.495
16.054
-0.687
-3.842
1
1
A_G1:C17_B
-0.163
-0.565
-1.528
-17.319
0.825
-4.909
1
3
A_G3:U15_B
7.047
-3.332
-0.255
-4.266
8.419
9.632
1
4
A_G4:A14_B
6.581
-4.652
-0.104
22.388
4.448
-2.399
1
7
A_G7:C11_B
-0.948
-0.508
-0.637
10.477
-4.058
4.334
1
6
A_U6:G12_B
-7.01
-3.339
-0.302
4.261
7.96
10.441
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.
