A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 25-May-2022 number of released structures: 12098
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NDB ID: PR0257  PDB ID: 2IZ8 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11R_A3:U17_R-0.796-0.4340.7888.369-19.1223.776
13R_G5:C15_R-0.454-0.173-0.1126.747-6.021.355
14R_G7:C14_R-1.044-0.2980.211-0.109-5.6982.926
15R_G8:C13_R-0.63-0.131-0.125-1.805-2.1943.096
12R_U4:A16_R0.247-0.0880.5-1.731-16.3638.979
17S_G5:C15_S-0.331-0.210.0036.67-10.794-3.212
18S_G7:C14_S-0.916-0.304-0.178-7.824-5.172-0.226
19S_G8:C13_S-0.7260.048-0.555-3.26-6.8436.76
16S_U4:A16_S-0.248-0.253-0.1222.59-13.1789.166

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.