2IZ8: Base Pair Morphology Parameters

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As of 25-May-2022 number of released structures: 12098

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NDB ID: PR0257 PDB ID: 2IZ8

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	R_A3:U17_R	-0.796	-0.434	0.788	8.369	-19.122	3.776
1	3	R_G5:C15_R	-0.454	-0.173	-0.112	6.747	-6.02	1.355
1	4	R_G7:C14_R	-1.044	-0.298	0.211	-0.109	-5.698	2.926
1	5	R_G8:C13_R	-0.63	-0.131	-0.125	-1.805	-2.194	3.096
1	2	R_U4:A16_R	0.247	-0.088	0.5	-1.731	-16.363	8.979
1	7	S_G5:C15_S	-0.331	-0.21	0.003	6.67	-10.794	-3.212
1	8	S_G7:C14_S	-0.916	-0.304	-0.178	-7.824	-5.172	-0.226
1	9	S_G8:C13_S	-0.726	0.048	-0.555	-3.26	-6.843	6.76
1	6	S_U4:A16_S	-0.248	-0.253	-0.122	2.59	-13.178	9.166

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.