2IZ8: Base Pair Morphology Step Parameters

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NDB ID: PR0257 PDB ID: 2IZ8

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	RR_A3U4:A16U17_RR	-0.104	-0.821	3.465	1.502	4.701	39.807	-1.757	0.331	3.344	6.872	-2.196	40.1
1	3	RR_G5G7:C14C15_RR	-0.17	-2.366	3.367	-5.212	4.139	28.662	-5.534	-0.764	2.987	8.221	10.352	29.409
1	4	RR_G7G8:C13C14_RR	-0.161	-1.9	3.163	-0.998	6.918	36.476	-3.831	0.131	2.772	10.928	1.577	37.117
1	2	RR_U4G5:C15A16_RR	-0.299	-1.288	2.998	5.919	10.118	29.299	-3.969	1.485	2.333	19.069	-11.155	31.509
1	6	SS_G5G7:C14C15_SS	0.002	-2.334	3.566	-2.077	4.559	27.16	-6.037	-0.527	3.13	9.604	4.376	27.61
1	7	SS_G7G8:C13C14_SS	-0.194	-1.867	3.023	1.856	11.509	34.892	-4.276	0.519	2.3	18.564	-2.993	36.73
1	5	SS_U4G5:C15A16_SS	0.161	-0.919	3.077	2.717	14.874	36.516	-2.933	0.048	2.534	22.584	-4.126	39.423

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.