2IZ9: Base Pair Morphology Parameters

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As of 11-May-2022 number of released structures: 12077

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NDB ID: PR0258 PDB ID: 2IZ9

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	R_A3:U17_R	0.751	0.652	0.804	-2.821	-14.852	12.189
1	3	R_G5:C15_R	-0.543	-0.425	-0.552	3.367	-4.589	-0.818
1	4	R_G7:C14_R	-0.244	-0.258	0.191	-0.734	-11.541	-12.88
1	5	R_G8:C13_R	-0.197	-0.123	-0.043	-0.994	2.268	1.352
1	2	R_U4:A16_R	0.192	-0.246	0.088	-0.444	-8.593	8.769
1	7	S_G5:C15_S	-0.439	-0.284	-0.134	7.727	-1.539	0.043
1	8	S_G7:C14_S	0.035	0.047	-0.106	-9.479	-11.767	-10.556
1	9	S_G8:C13_S	0.206	0.032	0.095	1.882	1.877	2.045
1	6	S_U4:A16_S	0.243	-0.18	-0.169	-1.928	-2.85	9.338

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.