2JA6: Base Pair Morphology Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: NA0294 PDB ID: 2JA6

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	N_DA1:DT16_T	0.682	0.171	-1.094	-1.472	-6.026	-27.745
1	2	N_DA2:DT15_T	0.232	0.156	-0.841	-4.75	-14.564	-18.244
1	5	N_DA5:DT12_T	0.24	0.674	-0.486	0.898	-27.419	-33.419
1	6	N_DC6:DG11_T	0.216	-0.09	-0.004	2.683	-17.018	-8.492
1	3	N_DG3:DC14_T	0.048	0.038	-0.171	2.303	-2.392	-9.873
1	4	N_DT4:DA13_T	-0.168	0.326	-0.267	3.378	-26.342	-24.384
1	7	N_DT7:DA10_T	-0.309	0.284	-0.019	-23.515	-4.5	-17.578
1	11	P_A4:DT25_T	-0.06	-0.207	-0.278	0.052	-20.698	21.327
1	14	P_A7:BRU22_T	0.409	-0.131	-0.265	-14.869	-10.506	20.043
1	9	P_C2:DA27_T	-1.063	0.418	0.085	13.209	-14.6	19.285
1	12	P_C5:DG24_T	0.078	0.032	0.103	8.859	-5.679	4.689
1	13	P_C6:DG23_T	0.473	-0.031	-0.622	18.665	-24.696	11.631
1	10	P_G3:DC26_T	-0.299	-0.012	-0.793	-0.079	-23.706	17.544
1	15	P_G8:DC21_T	-0.154	-0.115	-0.597	-12.198	-23.565	6.967
1	16	P_G9:DC20_T	-0.156	-0.06	-0.414	-7.331	-18.974	1.933
1	8	P_U0:DT29_T	-1.982	-0.351	-0.688	1.924	-15.694	-23.435

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.