A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: NA0294  PDB ID: 2JA6 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11N_DA1:DT16_T0.6820.171-1.094-1.472-6.026-27.745
12N_DA2:DT15_T0.2320.156-0.841-4.75-14.564-18.244
15N_DA5:DT12_T0.240.674-0.4860.898-27.419-33.419
16N_DC6:DG11_T0.216-0.09-0.0042.683-17.018-8.492
13N_DG3:DC14_T0.0480.038-0.1712.303-2.392-9.873
14N_DT4:DA13_T-0.1680.326-0.2673.378-26.342-24.384
17N_DT7:DA10_T-0.3090.284-0.019-23.515-4.5-17.578
111P_A4:DT25_T-0.06-0.207-0.2780.052-20.69821.327
114P_A7:BRU22_T0.409-0.131-0.265-14.869-10.50620.043
19P_C2:DA27_T-1.0630.4180.08513.209-14.619.285
112P_C5:DG24_T0.0780.0320.1038.859-5.6794.689
113P_C6:DG23_T0.473-0.031-0.62218.665-24.69611.631
110P_G3:DC26_T-0.299-0.012-0.793-0.079-23.70617.544
115P_G8:DC21_T-0.154-0.115-0.597-12.198-23.5656.967
116P_G9:DC20_T-0.156-0.06-0.414-7.331-18.9741.933
18P_U0:DT29_T-1.982-0.351-0.6881.924-15.694-23.435

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.