2JA6: Base Pair Morphology Step Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082

Search for released structures

NDB ID: NA0294 PDB ID: 2JA6

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	NN_DA1DA2:DT15DT16_TT	0.227	-0.256	3.119	0.478	5.11	31.132	-1.372	-0.332	3.042	9.441	-0.882	31.542
1	2	NN_DA2DG3:DC14DT15_TT	0.034	-0.1	2.876	-7.106	5.186	33.785	-0.856	-1.002	2.767	8.74	11.977	34.88
1	5	NN_DA5DC6:DG11DT12_TT	1.338	-0.3	3.268	-1.609	-7.635	34.687	0.625	-2.428	3.197	-12.609	2.657	35.527
1	6	NN_DC6DT7:DA10DG11_TT	-0.476	0.015	4.364	1.256	1.859	38.136	-0.289	0.938	4.343	2.842	-1.92	38.2
1	3	NN_DG3DT4:DA13DC14_TT	-0.869	-0.458	3.184	0.847	-7.105	34.898	0.269	1.543	3.191	-11.695	-1.394	35.602
1	4	NN_DT4DA5:DT12DA13_TT	-0.133	-0.241	3.301	-1.228	-4.199	34.037	0.26	0.03	3.309	-7.136	2.087	34.309
1	10	PP_A4C5:DG24DT25_TT	-0.18	-1.252	3.261	-9.114	0.207	31.39	-2.262	-1.268	3.179	0.372	16.416	32.654
1	13	PP_A7G8:DC21BRU22_TT	-0.347	-1.146	3.333	2.167	11.281	23.645	-5.38	1.312	2.493	25.678	-4.932	26.252
1	8	PP_C2G3:DC26DA27_TT	-0.177	-0.399	3.343	4.382	21.989	27.628	-3.847	0.928	2.358	38.93	-7.758	35.443
1	11	PP_C5C6:DG23DG24_TT	0.97	-1.231	3.122	5.55	6.198	25.89	-4.09	-0.747	2.896	13.4	-11.999	27.173
1	12	PP_C6A7:BRU22DG23_TT	0.114	-0.658	3.906	-4.999	14.848	25.579	-4.791	-1.405	3.009	30.195	10.167	29.927
1	9	PP_G3A4:DT25DC26_TT	-0.003	0.113	3.222	-3.527	11.29	30.284	-1.768	-0.61	3.05	20.647	6.45	32.461
1	14	PP_G8G9:DC20DC21_TT	-1.069	-1.169	3.424	-0.95	10.293	25.258	-5.016	2.034	2.779	22.38	2.066	27.26
1	7	PP_U0C2:DA27DT29_TT	0.958	-2.475	6.478	-6.328	12.513	61.8	-3.418	-1.449	5.82	12.018	6.077	63.217

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.