A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: NA0295  PDB ID: 2JA7 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
111_DA1:DT16_20.172-0.065-1.443-21.02814.53-8.39
121_DA2:DT15_20.643-0.196-1.118-5.8212.398-21.61
151_DA5:DT12_20.513-0.003-0.3837.279-24.647-12.637
161_DC6:DG11_2-0.2710.131-0.3790.471-17.322-5.82
131_DG3:DC14_2-0.265-0.182-0.4042.19311.819-5.745
141_DT4:DA13_20.324-0.339-0.0213.355-5.573-11.051
171_DT7:DA10_2-0.3130.58-0.624-14.25-11.667-19.211
1102_BRU22:A7_3-0.1430.051-0.69617.943-2.235-0.336
1152_DA27:C2_35.298-0.6780.5473.997-7.086-20.328
182_DC20:G9_30.343-0.051-0.37421.8941.4015.645
192_DC21:G8_30.1950.072-1.76832.928-10.8198.58
1142_DC26:G3_30.160.066-0.349-0.442-11.366-6.414
1112_DG23:C6_3-0.403-0.2880.0793.02-3.77-2.061
1122_DG24:C5_30.076-0.1-0.081-7.0150.775-2.053
1132_DT25:A4_3-0.1550.0550.122-4.09-5.619-4.826
1164_DA1:DT16_50.252-0.128-1.551-22.71212.261-8.961
1174_DA2:DT15_50.618-0.208-1.05-6.51313.104-20.301
1204_DA5:DT12_50.405-0.016-0.236.967-21.336-13.078
1214_DC6:DG11_5-0.2750.124-0.40.076-18.23-6.537
1184_DG3:DC14_5-0.291-0.157-0.3662.2713.811-5.872
1194_DT4:DA13_50.35-0.332-0.22713.383-4.972-10.339
1224_DT7:DA10_5-0.3110.547-0.523-15.989-13.335-20.434
1255_BRU22:A7_6-0.2010.091-0.73118.545-1.2920.514
1305_DA27:C2_65.341-0.6280.4856.011-7.829-19.682
1235_DC20:G9_60.2450.013-0.70325.769-3.7444.95
1245_DC21:G8_60.1760.099-1.64430.763-10.0399.489
1295_DC26:G3_60.2240.057-0.24-1.003-14.35-5.213
1265_DG23:C6_6-0.373-0.2580.0082.632-4.078-2.014
1275_DG24:C5_60.056-0.022-0.008-5.038-1.492-0.824
1285_DT25:A4_6-0.2060.0570.061-4.405-7.394-5.303

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.