A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: PD0997  PDB ID: 2JEI 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16P_DA6:DT13_T0.2880.052-0.2262.741-11.628-0.345
17P_DA7:DT12_T0.149-0.050.2983.015-5.764-1.26
110P_DA10:DT9_T0.640.112-0.054-8.933-6.9715.849
113P_DC13:DG6_T0.620.1-0.53518.5440.1355.625
11P_DG1:DC18_T-0.269-0.256-0.073-11.479-5.083.097
12P_DG2:DC17_T-0.453-0.247-0.061-1.847-8.3172.029
13P_DG3:DC16_T-0.137-0.2640.1234.125-5.256-3.413
14P_DG4:DC15_T-0.386-0.1960.30910.574-1.8315.713
15P_DG5:DC14_T0.278-0.0270.0286.722-4.737-2.33
18P_DG8:DC11_T0.316-0.0540.1317.327-5.2110.652
19P_DG9:DC10_T-0.1180.147-0.067-6.134-11.9926.081
111P_DT11:DA8_T0.138-0.103-0.226-1.811-7.723.672
112P_DT12:DA7_T-0.045-0.141-0.52.058-0.159-1.607

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.