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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
PD0997
PDB ID:
2JEI
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
6
PP_DA6DA7:DT12DT13_TT
-0.358
-0.41
3.193
-4.36
4.319
33.171
-1.391
-0.075
3.136
7.485
7.556
33.718
1
7
PP_DA7DG8:DC11DT12_TT
0.159
-0.232
3.282
2.525
4.279
32.553
-1.14
0.15
3.229
7.578
-4.472
32.92
1
10
PP_DA10DT11:DA8DT9_TT
0.055
-0.724
3.225
2.495
3.933
26.476
-2.539
0.503
3.079
8.504
-5.394
26.875
1
1
PP_DG1DG2:DC17DC18_TT
0.691
0.237
3.128
2.284
2.787
32.707
-0.041
-0.842
3.177
4.931
-4.041
32.9
1
2
PP_DG2DG3:DC16DC17_TT
-1.264
-0.551
3.271
-3.638
8.696
30.332
-2.608
1.642
3.124
16.136
6.752
31.73
1
3
PP_DG3DG4:DC15DC16_TT
0.721
-0.487
3.124
-2.157
7.14
33.434
-1.878
-1.543
2.91
12.222
3.692
34.233
1
4
PP_DG4DG5:DC14DC15_TT
-0.191
-0.611
3.416
1.603
8.154
30.063
-2.723
0.667
3.133
15.354
-3.019
31.165
1
5
PP_DG5DA6:DT13DC14_TT
-0.243
-0.319
3.423
1.879
3.273
33.021
-1.128
0.752
3.358
5.735
-3.292
33.23
1
8
PP_DG8DG9:DC10DC11_TT
0.523
-0.463
3.705
0.304
3.642
34.068
-1.431
-0.834
3.642
6.195
-0.517
34.258
1
9
PP_DG9DA10:DT9DC10_TT
-0.667
-0.436
3.336
-0.188
-0.726
38.553
-0.569
0.986
3.347
-1.1
0.285
38.56
1
11
PP_DT11DT12:DA7DA8_TT
0.476
-0.366
3.303
0.557
4.053
32.816
-1.332
-0.743
3.243
7.139
-0.981
33.064
1
12
PP_DT12DC13:DG6DA7_TT
0.294
-0.588
3.106
-0.498
7.245
26.403
-2.906
-0.735
2.84
15.493
1.064
27.367
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.