2JEI: Base Pair Morphology Step Parameters

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NDB ID: PD0997 PDB ID: 2JEI

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	6	PP_DA6DA7:DT12DT13_TT	-0.358	-0.41	3.193	-4.36	4.319	33.171	-1.391	-0.075	3.136	7.485	7.556	33.718
1	7	PP_DA7DG8:DC11DT12_TT	0.159	-0.232	3.282	2.525	4.279	32.553	-1.14	0.15	3.229	7.578	-4.472	32.92
1	10	PP_DA10DT11:DA8DT9_TT	0.055	-0.724	3.225	2.495	3.933	26.476	-2.539	0.503	3.079	8.504	-5.394	26.875
1	1	PP_DG1DG2:DC17DC18_TT	0.691	0.237	3.128	2.284	2.787	32.707	-0.041	-0.842	3.177	4.931	-4.041	32.9
1	2	PP_DG2DG3:DC16DC17_TT	-1.264	-0.551	3.271	-3.638	8.696	30.332	-2.608	1.642	3.124	16.136	6.752	31.73
1	3	PP_DG3DG4:DC15DC16_TT	0.721	-0.487	3.124	-2.157	7.14	33.434	-1.878	-1.543	2.91	12.222	3.692	34.233
1	4	PP_DG4DG5:DC14DC15_TT	-0.191	-0.611	3.416	1.603	8.154	30.063	-2.723	0.667	3.133	15.354	-3.019	31.165
1	5	PP_DG5DA6:DT13DC14_TT	-0.243	-0.319	3.423	1.879	3.273	33.021	-1.128	0.752	3.358	5.735	-3.292	33.23
1	8	PP_DG8DG9:DC10DC11_TT	0.523	-0.463	3.705	0.304	3.642	34.068	-1.431	-0.834	3.642	6.195	-0.517	34.258
1	9	PP_DG9DA10:DT9DC10_TT	-0.667	-0.436	3.336	-0.188	-0.726	38.553	-0.569	0.986	3.347	-1.1	0.285	38.56
1	11	PP_DT11DT12:DA7DA8_TT	0.476	-0.366	3.303	0.557	4.053	32.816	-1.332	-0.743	3.243	7.139	-0.981	33.064
1	12	PP_DT12DC13:DG6DA7_TT	0.294	-0.588	3.106	-0.498	7.245	26.403	-2.906	-0.735	2.84	15.493	1.064	27.367

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.