2JPP: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082

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NDB ID: 2JPP PDB ID: 2JPP

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	4	C_C4:G17_C	0.187	-0.122	0.052	1.666	-6.681	-1.88
1	7	C_C7:G14_C	0.196	-0.168	-0.192	4.248	-7.302	-1.776
1	1	C_G1:C20_C	-0.296	-0.113	-0.445	-13.608	-6.616	-0.939
1	2	C_G2:C19_C	-0.414	-0.112	-0.29	-8.93	-8.734	0.84
1	3	C_G3:C18_C	-0.165	-0.142	-0.1	-0.709	-6.722	-1.767
1	8	C_G10:G11_C	6.393	3.936	-0.342	-10.838	57.261	9.989
1	5	C_U5:A16_C	0.043	-0.053	0.134	5.57	-9.443	-0.722
1	6	C_U6:A15_C	-0.344	-0.005	0.108	9.062	-10.868	-0.253
1	12	D_C4:G17_D	0.209	-0.116	-0.138	1.421	-3.746	-0.882
1	15	D_C7:G14_D	0.211	-0.18	0.095	-2.591	-4.166	-2.291
1	9	D_G1:C20_D	-0.293	-0.095	-0.582	-15.655	-2.993	-0.442
1	10	D_G2:C19_D	-0.43	-0.094	-0.428	-10.408	-7.414	2.283
1	11	D_G3:C18_D	-0.124	-0.096	-0.148	0.392	-1.49	-0.401
1	16	D_G10:G11_D	6.223	4.139	-0.248	-11.839	61.916	8.088
1	13	D_U5:A16_D	0.116	-0.034	0.059	8.102	-4.115	1.016
1	14	D_U6:A15_D	-0.423	-0.042	-0.185	9.591	-9.515	-2.735

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.