A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: 2JPP  PDB ID: 2JPP 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14C_C4:G17_C0.187-0.1220.0521.666-6.681-1.88
17C_C7:G14_C0.196-0.168-0.1924.248-7.302-1.776
11C_G1:C20_C-0.296-0.113-0.445-13.608-6.616-0.939
12C_G2:C19_C-0.414-0.112-0.29-8.93-8.7340.84
13C_G3:C18_C-0.165-0.142-0.1-0.709-6.722-1.767
18C_G10:G11_C6.3933.936-0.342-10.83857.2619.989
15C_U5:A16_C0.043-0.0530.1345.57-9.443-0.722
16C_U6:A15_C-0.344-0.0050.1089.062-10.868-0.253
112D_C4:G17_D0.209-0.116-0.1381.421-3.746-0.882
115D_C7:G14_D0.211-0.180.095-2.591-4.166-2.291
19D_G1:C20_D-0.293-0.095-0.582-15.655-2.993-0.442
110D_G2:C19_D-0.43-0.094-0.428-10.408-7.4142.283
111D_G3:C18_D-0.124-0.096-0.1480.392-1.49-0.401
116D_G10:G11_D6.2234.139-0.248-11.83961.9168.088
113D_U5:A16_D0.116-0.0340.0598.102-4.1151.016
114D_U6:A15_D-0.423-0.042-0.1859.591-9.515-2.735

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.