2JPP: Base Pair Morphology Step Parameters

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NDB ID: 2JPP PDB ID: 2JPP

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	4	CC_C4U5:A16G17_CC	0.397	-1.9	3.232	0.712	0.522	29.266	-3.871	-0.633	3.207	1.033	-1.409	29.279
1	1	CC_G1G2:C19C20_CC	0.01	-1.66	3.276	-2.37	11.455	28.298	-5.208	-0.445	2.427	22.266	4.607	30.575
1	2	CC_G2G3:C18C19_CC	-0.418	-1.81	3.15	-3.602	9.618	30.373	-4.824	0.181	2.507	17.732	6.641	32.023
1	3	CC_G3C4:G17C18_CC	0.174	-1.864	3.33	-0.233	6.969	31.674	-4.516	-0.351	2.864	12.578	0.42	32.413
1	5	CC_U5U6:A15A16_CC	0.329	-1.956	3.221	0.053	-2.247	30.492	-3.261	-0.613	3.354	-4.264	-0.1	30.573
1	6	CC_U6C7:G14A15_CC	-0.15	-1.939	3.408	1.031	0.654	34.177	-3.405	0.424	3.365	1.113	-1.754	34.198
1	10	DD_C4U5:A16G17_DD	0.479	-2.024	3.186	-0.405	2.239	27.94	-4.681	-1.08	3.011	4.628	0.837	28.031
1	7	DD_G1G2:C19C20_DD	0.261	-1.804	3.277	-1.79	13.435	26.972	-5.872	-0.822	2.135	26.765	3.566	30.129
1	8	DD_G2G3:C18C19_DD	-0.414	-2.046	3.069	-4.307	12.331	27.241	-5.99	0.077	2.016	24.476	8.55	30.157
1	9	DD_G3C4:G17C18_DD	0.138	-2.02	3.397	0.894	12.546	29.921	-5.655	-0.103	2.383	23.059	-1.643	32.401
1	11	DD_U5U6:A15A16_DD	0.152	-2.157	3.314	1.934	-2.037	29.217	-3.803	0.132	3.456	-4.027	-3.823	29.348
1	12	DD_U6C7:G14A15_DD	0.013	-2.179	3.694	-1.641	-0.816	34.794	-3.499	-0.305	3.738	-1.363	2.742	34.841

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.