A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
Search for released structures

NDB ID: 2JPP  PDB ID: 2JPP 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
14CC_C4U5:A16G17_CC0.397-1.93.2320.7120.52229.266-3.871-0.6333.2071.033-1.40929.279
11CC_G1G2:C19C20_CC0.01-1.663.276-2.3711.45528.298-5.208-0.4452.42722.2664.60730.575
12CC_G2G3:C18C19_CC-0.418-1.813.15-3.6029.61830.373-4.8240.1812.50717.7326.64132.023
13CC_G3C4:G17C18_CC0.174-1.8643.33-0.2336.96931.674-4.516-0.3512.86412.5780.4232.413
15CC_U5U6:A15A16_CC0.329-1.9563.2210.053-2.24730.492-3.261-0.6133.354-4.264-0.130.573
16CC_U6C7:G14A15_CC-0.15-1.9393.4081.0310.65434.177-3.4050.4243.3651.113-1.75434.198
110DD_C4U5:A16G17_DD0.479-2.0243.186-0.4052.23927.94-4.681-1.083.0114.6280.83728.031
17DD_G1G2:C19C20_DD0.261-1.8043.277-1.7913.43526.972-5.872-0.8222.13526.7653.56630.129
18DD_G2G3:C18C19_DD-0.414-2.0463.069-4.30712.33127.241-5.990.0772.01624.4768.5530.157
19DD_G3C4:G17C18_DD0.138-2.023.3970.89412.54629.921-5.655-0.1032.38323.059-1.64332.401
111DD_U5U6:A15A16_DD0.152-2.1573.3141.934-2.03729.217-3.8030.1323.456-4.027-3.82329.348
112DD_U6C7:G14A15_DD0.013-2.1793.694-1.641-0.81634.794-3.499-0.3053.738-1.3632.74234.841

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.