2JR4: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 23-Nov-2022 number of released structures: 12471

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NDB ID: 2JR4 PDB ID: 2JR4

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	A_C27:G43_A	0.155	-0.062	-0.033	2.412	4.544	-4.688
1	2	A_C28:G42_A	0.135	-0.073	0.019	3.082	6.452	-5.473
1	4	A_C30:G40_A	0.231	-0.115	0.139	-0.742	4.112	-2.908
1	5	A_C31:G39_A	0.023	-0.047	0.051	-0.654	3.716	-5.704
1	6	A_C32:A38_A	6.854	-2.241	0.087	-18.538	-13.78	10.871
1	3	A_U29:A41_A	-0.109	0.06	0.114	-0.759	2.586	-8.116

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.