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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID:
2JR4
PDB ID:
2JR4
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
1
A_C27:G43_A
0.155
-0.062
-0.033
2.412
4.544
-4.688
1
2
A_C28:G42_A
0.135
-0.073
0.019
3.082
6.452
-5.473
1
4
A_C30:G40_A
0.231
-0.115
0.139
-0.742
4.112
-2.908
1
5
A_C31:G39_A
0.023
-0.047
0.051
-0.654
3.716
-5.704
1
6
A_C32:A38_A
6.854
-2.241
0.087
-18.538
-13.78
10.871
1
3
A_U29:A41_A
-0.109
0.06
0.114
-0.759
2.586
-8.116
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.