2JSG: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 26-Jan-2023 number of released structures: 12597

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NDB ID: 2JSG PDB ID: 2JSG

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	A_C27:G43_A	0.158	-0.062	-0.034	2.455	4.562	-4.689
1	2	A_C28:G42_A	0.139	-0.077	0.022	3.063	6.39	-5.563
1	4	A_C30:G40_A	0.232	-0.117	0.137	-0.822	4.025	-2.941
1	5	A_C31:G39_A	0.035	-0.053	0.062	-0.675	3.588	-5.884
1	6	A_C32:A38_A	3.798	-0.493	1.156	-0.351	-1.283	-0.425
1	3	A_U29:A41_A	-0.113	0.059	0.113	-0.799	2.532	-8.293

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.