2JWV: Base Pair Morphology Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: 2JWV PDB ID: 2JWV

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	A_A2:U28_A	-0.285	-0.104	0.298	-0.033	-6.997	-2.419
1	3	A_A4:U26_A	-0.1	-0.132	0.093	0.353	-15.434	-5.296
1	6	A_A9:G22_A	-6.281	-3.686	-1.742	2.076	14.038	-8.772
1	7	A_A10:U21_A	-0.261	-0.152	-0.219	-1.769	-4.346	-0.118
1	8	A_A11:U20_A	0.216	-0.075	-0.093	1.032	-6.692	-1.455
1	4	A_C5:G25_A	0.25	-0.131	0.064	1.612	-8.355	-2.17
1	9	A_C12:G19_A	0.275	-0.127	-0.129	5.909	9.235	-1.882
1	11	A_G14:A17_A	5.922	-5.111	1.587	22.669	11.442	2.448
1	2	A_U3:A27_A	0.102	-0.113	-0.006	-0.049	-12.788	-3.22
1	5	A_U7:C24_A	-0.031	-2.839	1.962	11.455	0.485	15.009
1	10	A_U13:G18_A	2.401	-0.014	0.55	11.805	19.709	19.959

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.