A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 1-Apr-2020 number of released structures: 10687
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NDB ID: 2JYH  PDB ID: 2JYH 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14A_A4:U40_A0.031-0.0740.182-2.667-7.053-1.731
17A_A6:U36_A-3.628-1.480.706-3.62917.199-95.438
110A_A10:U33_A-0.12-0.143-0.38215.086-2.949-0.602
111A_A11:U32_A-0.419-0.429-0.884-3.574-24.5769.825
113A_A13:U30_A0.434-0.059-0.133-2.67-7.703-0.493
114A_A14:U29_A0.504-0.108-0.1720.01624.7-6.662
127A_A21:A49_B-1.378-2.5840.54228.507-24.381178.567
16A_A37:A38_A6.386-0.5611.872-20.0996.47-1.241
115A_C15:G28_A0.445-0.226-0.42719.17913.045-2.738
116A_C16:G27_A0.022-0.409-1.3213.898-12.9594.264
11A_G1:U43_A-1.803-0.646-1.037-15.92522.811-12.144
12A_G2:C42_A-0.02-0.354-0.864-0.68616.691-8.652
13A_G3:C41_A-0.058-0.1770.256-12.37614.5944.728
18A_G8:C35_A-0.44-0.279-0.525-9.1114.791-4.994
19A_G9:C34_A0.443-0.265-0.875-7.31710.429-7.332
112A_G12:C31_A-0.633-0.364-0.889-10.925-15.4363.045
117A_G17:U26_A-1.85-0.593-1.065-18.93213.091-9.672
118A_G18:U25_A-2.564-0.526-0.329-2.85314.754-2.158
119A_G19:C24_A-0.634-0.1550.27220.06216.642-1.727
120A_G20:A23_A6.588-3.917-0.32231.141.819-11.659
15A_U5:G39_A3.095-0.781-0.3810.928-5.063-0.273
124B_A47:U83_B0.027-0.0730.17-3.131-7.105-1.756
130B_A53:U76_B-0.116-0.142-0.38514.832-2.874-0.602
131B_A54:U75_B-0.416-0.43-0.885-3.478-24.4879.775
133B_A56:U73_B0.437-0.059-0.134-2.708-7.501-0.487
134B_A57:U72_B0.505-0.108-0.171-0.22824.783-6.644
126B_A80:A81_B6.383-0.5631.888-20.316.544-1.284
135B_C58:G71_B0.446-0.225-0.4118.91813.287-2.582
136B_C59:G70_B0.03-0.41-1.32814.165-13.0444.39
121B_G44:U86_B-1.804-0.643-1.045-16.2722.834-12.15
122B_G45:C85_B-0.011-0.353-0.875-1.03516.355-8.615
123B_G46:C84_B-0.064-0.180.26-12.35914.6574.782
128B_G51:C78_B-0.433-0.278-0.542-9.84214.564-5.042
129B_G52:C77_B0.443-0.266-0.884-7.59410.272-7.351
132B_G55:C74_B-0.632-0.368-0.907-11.272-15.5653.1
137B_G60:U69_B-1.851-0.587-1.047-18.6213.405-9.488
138B_G61:U68_B-2.566-0.524-0.303-2.51214.965-2.024
139B_G62:C67_B-0.637-0.1580.26419.63316.82-1.68
140B_G63:A66_B6.583-3.919-0.33731.352.261-11.787
125B_U48:G82_B3.088-0.776-0.3670.73-4.619-0.409

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.