A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 1-Apr-2020 number of released structures: 10687
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NDB ID: 2JYH  PDB ID: 2JYH 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
14AA_A4U5:G39U40_AA0.495-0.223.9453.0041.53440.921-0.515-0.313.962.19-4.28841.054
17AA_A6G8:C35U36_AA1.691-2.8433.914-9.3529.08266.054-2.963-1.9343.3078.2488.49367.185
110AA_A10A11:U32U33_AA0.678-0.3784.3575.85816.08433.497-3.392-0.0333.85125.911-9.43737.506
111AA_A11G12:C31U32_AA-0.8940.2353.696-4.16721.39431.233-2.870.7463.28634.9176.80137.93
113AA_A13A14:U29U30_AA0.023-0.9413.717-1.10123.1727.234-5.059-0.2052.25941.0341.9535.631
114AA_A14C15:G28U29_AA0.308-0.9873.3610.99517.74627.329-4.71-0.3862.31733.447-1.87532.508
126AB_A21G51:C78A49_BB3.547-2.5424.257-22.56420.43424.525-5.538-7.226-0.62534.92138.56238.908
16AA_A37A6:U36A38_AA0.223-3.277-0.254159.021-0.0123.946-1.665-0.150.165-0.006-87.8159.482
115AA_C15C16:G27G28_AA2.292-0.4712.86117.718.25332.145-2.731-1.2973.03728.123-27.27140.776
116AA_C16G17:U26G27_AA-2.059-1.394.778-11.3259.80521.983-6.978-0.0824.32822.63926.1526.549
11AA_G1G2:C42U43_AA-0.052-1.7033.239-1.9657.46329.555-4.613-0.2652.73414.3253.77230.524
12AA_G2G3:C41C42_AA1.182-0.8655.034-4.2221.30728.882-2.143-3.7274.7732.6028.40229.211
13AA_G3A4:U40C41_AA-1.051-0.7523.7223.1513.67529.426-2.3112.773.4767.174-6.1529.812
18AA_G8G9:C34C35_AA0.023-1.0844.4362.576-3.78932.927-1.0230.5524.518-6.644-4.51733.235
19AA_G9A10:U33C34_AA-0.528-1.0232.907-1.128.43327.242-3.7050.8562.50317.3742.30828.515
112AA_G12A13:U30C31_AA-0.344-0.4013.165-4.17215.16233.415-2.5970.0052.75724.7386.80736.835
117AA_G17G18:U25U26_AA0.373-1.0513.595-3.919-3.09625.849-1.387-1.9853.599-6.8398.65826.319
118AA_G18G19:C24U25_AA-0.191-0.8773.33-4.7791.78132.093-1.885-0.5083.2723.1978.57632.486
119AA_G19G20:A23C24_AA-1.4110.2513.55213.77231.41152.59-1.332.0582.87831.926-13.99862.111
15AA_U5A37:A38G39_AA-0.3825.443-0.399144.14372.812171.3722.7270.18-0.24136.418-72.094178.613
123BB_A47U48:G82U83_BB0.488-0.2243.9412.7761.39240.868-0.503-0.333.9541.991-3.96940.981
129BB_A53A54:U75U76_BB0.679-0.3774.3485.94515.9833.51-3.37-0.023.84925.749-9.5837.487
130BB_A54G55:C74U75_BB-0.8890.2413.709-4.03621.58631.163-2.8960.7563.28935.236.58737.966
132BB_A56A57:U72U73_BB0.023-0.9463.719-1.15123.25927.226-5.068-0.2122.25141.1522.03735.683
133BB_A57C58:G71U72_BB0.31-0.9963.3640.84217.72627.374-4.717-0.4132.31733.378-1.58632.531
125BA_A80A21:A49A81_BB0.0444.295-2.017-157.81154.412-169.831-2.1180.108-2.129-27.215-78.93-178.844
134BB_C58C59:G70G71_BB2.292-0.4692.84517.9218.01832.233-2.69-1.2793.04127.713-27.56240.836
135BB_C59G60:U69G70_BB-2.056-1.3944.776-11.5049.79521.955-6.966-0.1564.32522.59726.53926.599
120BB_G44G45:C85U86_BB-0.06-1.6993.243-1.9377.40929.628-4.587-0.2442.74614.1923.7130.58
121BB_G45G46:C84C85_BB1.18-0.8635.021-4.4121.21928.775-2.117-3.7964.7512.4338.80729.129
122BB_G46A47:U83C84_BB-1.058-0.7563.7333.2083.81829.445-2.3482.7943.4777.444-6.25529.855
127BB_G51G52:C77C78_BB0.011-1.0764.4252.495-3.82732.91-1.0020.5534.507-6.715-4.37833.217
128BB_G52A53:U76C77_BB-0.53-1.022.906-1.2488.39127.285-3.6860.8332.50817.2662.56828.549
131BB_G55A56:U73C74_BB-0.344-0.3953.154-4.33215.11433.415-2.577-0.0142.75224.6617.06836.833
136BB_G60G61:U68U69_BB0.38-1.0633.592-3.888-3.26225.843-1.362-1.9923.601-7.2058.58826.329
137BB_G61G62:C67U68_BB-0.198-0.8883.346-4.6472.06132.075-1.958-0.4763.283.7018.34432.465
138BB_G62G63:A66C67_BB-1.4130.2513.53913.68531.02552.646-1.3112.0582.87631.574-13.92861.959
124BB_U48A80:A81G82_BB-0.3875.433-0.385143.93572.756171.7522.7220.183-0.23536.389-71.989178.66

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.