2JYM: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077

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NDB ID: 2JYM PDB ID: 2JYM

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	7	A_A8:U16_A	-0.237	0.096	-0.04	-7.933	-11.11	10.588
1	3	A_C3:G20_A	0.598	-0.179	0.023	4.142	-19.983	-0.143
1	5	A_C5:G18_A	0.11	-0.018	-0.373	18.562	-9.834	-0.303
1	6	A_C7:G17_A	0.387	0.067	-0.447	32.545	-26.996	1.689
1	9	A_C10:G13_A	0.315	-0.135	-0.493	-2.933	9.185	-3.293
1	1	A_G1:C22_A	-0.54	-0.149	-0.129	3.708	-4.733	-0.906
1	2	A_G2:U21_A	-2.077	-0.11	0.41	5.936	-15.345	9.282
1	8	A_G9:C15_A	-0.246	-0.094	0.121	-6.42	-7.908	-3.647
1	4	A_U4:A19_A	-0.023	0.007	0.062	-0.806	-10.191	-2.198

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.