A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
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NDB ID: 2JYM  PDB ID: 2JYM 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
17A_A8:U16_A-0.2370.096-0.04-7.933-11.1110.588
13A_C3:G20_A0.598-0.1790.0234.142-19.983-0.143
15A_C5:G18_A0.11-0.018-0.37318.562-9.834-0.303
16A_C7:G17_A0.3870.067-0.44732.545-26.9961.689
19A_C10:G13_A0.315-0.135-0.493-2.9339.185-3.293
11A_G1:C22_A-0.54-0.149-0.1293.708-4.733-0.906
12A_G2:U21_A-2.077-0.110.415.936-15.3459.282
18A_G9:C15_A-0.246-0.0940.121-6.42-7.908-3.647
14A_U4:A19_A-0.0230.0070.062-0.806-10.191-2.198

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.