A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
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NDB ID: 2JYM  PDB ID: 2JYM 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
17AA_A8G9:C15U16_AA-1.271-1.6173.34-3.726-4.00833.884-2.0681.533.617-6.8216.34134.31
13AA_C3U4:A19G20_AA-0.162-1.5133.2811.65710.55229.422-4.6570.5912.58419.966-3.13631.26
15AA_C5C7:G17G18_AA-0.8440.5313.5464.405-11.46748.7481.51.3313.268-13.642-5.24150.18
16AA_C7A8:U16G17_AA-0.106-1.3494.185-5.75111.11539.283-3.4-0.6163.66716.0468.30341.153
11AA_G1G2:U21C22_AA0.375-2.1222.86-8.2849.68326.626-5.723-2.0641.80119.65816.81829.469
12AA_G2C3:G20U21_AA-0.893-1.1363.2650.0373.30145.536-1.7491.1543.1794.258-0.04845.649
18AA_G9C10:G13C15_AA-0.504-2.5563.3097.1280.43919.045-7.4364.5672.8731.271-20.62820.329
14AA_U4C5:G18A19_AA0.299-1.0022.8733.1182.38328.503-2.4820.0072.7984.81-6.29428.767

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.