2K65: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082

Search for released structures

NDB ID: 2K65 PDB ID: 2K65

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	4	A_A16:U62_B	0.417	-0.031	0.05	0.172	-18.641	-7.89
1	3	A_C15:G63_B	-0.63	-0.189	-0.269	7.256	-12.243	-7.441
1	5	A_C17:G61_B	-0.611	-0.158	-0.421	3.297	-5.393	7.001
1	1	A_G13:C65_B	-1.064	-0.331	0.141	4.161	2.615	1.976
1	2	A_G14:U64_B	-1.787	-0.528	0.039	-2.63	-6.773	-9.538
1	7	A_G19:C59_B	0.567	-0.167	-0.143	-0.856	-5.445	0.692
1	6	A_U18:A60_B	0.955	-0.184	-0.151	-2.977	-3.628	6.839

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.