2K65: Base Pair Morphology Step Parameters

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NDB ID: 2K65 PDB ID: 2K65

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	4	AA_A16C17:G61U62_BB	1.195	-1.572	3.283	1.969	-11.567	29.745	-0.535	-1.778	3.693	-21.509	-3.661	31.927
1	3	AA_C15A16:U62G63_BB	0.135	-1.905	2.926	-0.81	10.968	38.15	-3.856	-0.277	2.309	16.369	1.209	39.647
1	5	AA_C17U18:A60G61_BB	0.388	-1.438	3.114	-1.194	24.23	32.947	-4.27	-0.666	1.696	37.114	1.829	40.714
1	1	AA_G13G14:U64C65_BB	-0.521	-0.967	3.771	-2.061	29.096	28.04	-4.889	0.51	1.997	46.926	3.323	40.249
1	2	AA_G14C15:G63U64_BB	0.664	-1.142	2.607	-2.393	18.027	32.809	-3.463	-1.259	1.72	29.282	3.887	37.39
1	6	AA_U18G19:C59A60_BB	-0.661	-1.809	2.849	-2.359	-0.087	28.484	-3.647	0.867	2.899	-0.176	4.783	28.579

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.