2K7E: Base Pair Morphology Step Parameters

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NDB ID: 2K7E PDB ID: 2K7E

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	7	AA_A8A9:U4U5_BB	0.134	-0.862	3.142	-1.545	5.33	35.449	-2.119	-0.426	2.977	8.688	2.518	35.866
1	8	AA_A9A10:SUR3U4_BB	-1.238	-0.338	2.975	-1.319	4.569	38.898	-1.001	1.703	2.956	6.83	1.972	39.177
1	9	AA_A10A11:U2SUR3_BB	0.279	-0.706	3.958	0.555	8.996	29.061	-3.477	-0.4	3.588	17.407	-1.075	30.397
1	10	AA_A11G12:C1U2_BB	0.518	-0.507	3.114	-1.345	7.858	28.118	-2.593	-1.299	2.844	15.776	2.7	29.205
1	2	AA_C2G3:U10G11_BB	-0.269	-0.749	3.262	-1.903	17.323	26.348	-4.415	0.163	2.349	33.718	3.704	31.504
1	1	AA_G1C2:G11C12_BB	-0.704	-0.335	3.195	1.042	11.933	35.27	-2.052	1.237	2.913	19.029	-1.662	37.187
1	3	AA_G3G4:C9U10_BB	-0.131	-0.35	3.391	-3.186	7.467	34.563	-1.699	-0.266	3.246	12.358	5.272	35.475
1	4	AA_G4G6:A7C9_BB	-1.345	-1.093	6.622	-2.948	15.659	71.698	-1.932	0.937	6.348	13.208	2.486	73.215
1	5	AA_G6U7:A6A7_BB	1.539	-0.528	3.127	-5.225	1.974	33.357	-1.2	-3.42	2.826	3.41	9.025	33.808
1	6	AA_U7A8:U5A6_BB	-0.663	-0.878	3.389	-4.319	4.276	37.397	-1.92	0.45	3.325	6.616	6.682	37.87

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.