2K96: Base Pair Morphology Parameters

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As of 23-Nov-2022 number of released structures: 12471

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NDB ID: 2K96 PDB ID: 2K96

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	7	A_A173:U99_A	0.155	-2.866	-0.173	-1.054	5.11	68.818
1	8	A_A174:U115_A	-0.207	-0.096	-0.058	2.019	-4.015	9.804
1	9	A_A175:U114_A	-0.224	-0.163	-0.366	-4.847	8.546	0.936
1	10	A_A176:U113_A	0.708	0.203	-0.226	-12.537	-10.0	-13.995
1	14	A_A181:U109_A	0.93	0.111	-0.503	-6.383	7.577	-14.808
1	4	A_C96:G118_A	0.291	-0.133	-0.284	-3.924	-2.93	-3.39
1	13	A_C180:G110_A	-0.381	-0.336	-1.101	15.11	-2.991	-6.929
1	16	A_C183:G107_A	-0.672	-0.041	0.054	-3.345	0.685	-8.702
1	1	A_G93:C121_A	0.572	0.029	0.13	2.404	3.625	5.566
1	2	A_G94:C120_A	0.605	-0.002	-0.251	-0.276	-2.204	7.795
1	3	A_G95:C119_A	-0.783	-0.34	-0.275	5.4	-4.016	-0.607
1	6	A_G98:C116_A	0.629	0.012	0.181	-0.761	-8.842	0.369
1	11	A_G178:C112_A	0.343	-0.199	-0.341	-3.297	-9.491	-2.639
1	15	A_G182:C108_A	0.577	-0.386	-0.877	1.204	10.454	-14.185
1	5	A_U97:A117_A	-0.724	0.008	-0.275	-3.558	2.242	4.152
1	12	A_U179:A111_A	0.525	0.004	0.049	13.409	3.754	-17.601

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.