2K96: Base Pair Morphology Step Parameters

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NDB ID: 2K96 PDB ID: 2K96

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	7	AA_A173A174:U115U99_AA	0.091	-2.011	2.527	-1.394	14.295	67.766	-2.149	-0.117	2.116	12.675	1.236	69.093
1	8	AA_A174A175:U114U115_AA	-0.419	-0.987	4.27	0.0	-7.873	32.47	0.034	0.729	4.382	-13.828	-0.001	33.386
1	9	AA_A175A176:U113U114_AA	-1.004	-2.118	3.855	6.002	14.429	26.166	-6.901	3.105	2.145	28.831	-11.994	30.408
1	10	AA_A176G178:C112U113_AA	1.118	-0.55	3.082	2.44	18.755	35.729	-2.752	-1.37	2.564	28.263	-3.677	40.281
1	14	AA_A181G182:C108U109_AA	-0.263	-2.317	3.446	2.392	4.939	27.891	-5.843	1.079	2.968	10.123	-4.903	28.415
1	4	AA_C96U97:A117G118_AA	0.961	-0.883	3.422	2.802	15.342	31.724	-3.742	-1.169	2.789	26.18	-4.782	35.262
1	13	AA_C180A181:U109G110_AA	-1.437	-1.112	3.692	-13.421	20.321	51.042	-2.492	0.659	3.322	22.199	14.661	56.2
1	1	AA_G93G94:C120C121_AA	0.624	-1.092	3.517	1.95	24.381	23.2	-5.702	-0.775	1.701	46.998	-3.759	33.589
1	2	AA_G94G95:C119C120_AA	-0.33	-1.712	2.952	-8.211	-5.649	25.385	-2.256	-1.302	3.201	-12.268	17.832	27.241
1	3	AA_G95C96:G118C119_AA	-1.519	-1.658	3.708	-3.714	0.763	39.493	-2.546	1.741	3.798	1.126	5.481	39.668
1	6	AA_G98A173:U99C116_AA	-6.511	-1.284	1.913	8.878	-6.666	11.883	-4.296	23.365	-1.619	-25.935	-34.541	16.249
1	11	AA_G178U179:A111C112_AA	-0.05	-0.969	2.609	-1.601	19.155	20.683	-5.081	-0.156	1.276	43.177	3.609	28.165
1	15	AA_G182C183:G107C108_AA	0.074	-1.13	4.005	-5.496	8.581	35.942	-3.111	-0.977	3.601	13.573	8.694	37.313
1	5	AA_U97G98:C116A117_AA	0.12	-1.568	2.712	-1.619	13.718	23.464	-5.761	-0.542	1.559	30.57	3.607	27.178
1	12	AA_U179C180:G110A111_AA	0.912	-0.808	3.782	4.042	-3.239	30.612	-0.771	-0.781	3.93	-6.081	-7.587	31.037

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.