A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 1-Apr-2020 number of released structures: 10687
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NDB ID: 2KD4  PDB ID: 2KD4 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12A_C2:G7_B0.359-0.210.40615.65-39.027-6.304
13A_C3:G6_B0.88-0.276-0.19815.018-8.2162.153
15A_C5:G4_B1.049-0.4240.501-3.789-13.4461.215
18A_C8:G1_B0.152-0.029-0.26212.867-26.1311.48
11A_G1:C8_B-0.240.023-0.546-23.28-29.533.603
14A_G4:C5_B-1.083-0.4630.567.428-13.8340.727
16A_G6:C3_B-0.958-0.4130.166-13.6-12.364-1.714
17A_G7:C2_B-0.206-0.074-0.102-15.672-30.999-1.036

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.