A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: 2KD8  PDB ID: 2KD8 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13A_A3:U20_A0.0650.069-0.023-3.77-15.6236.68
11A_G1:C22_A-0.297-0.0490.03-1.2311.263-2.265
12A_G2:C21_A-0.468-0.074-0.1610.367-15.4364.595
15A_G5:C18_A-0.221-0.130.194-6.396-14.698-1.969
16A_G6:C17_A-0.252-0.098-0.105-12.09-21.6150.052
19A_G9:U14_A-1.83-0.3060.353.011-20.6350.788
14A_U4:A19_A-0.1650.05-0.151-2.334-15.75-5.377
17A_U7:G16_A1.929-0.2780.417-13.759-10.1241.733
18A_U8:A15_A-0.056-0.030.511-8.805-6.5835.225

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.