A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
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NDB ID: 2KDQ  PDB ID: 2KDQ 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14B_A20:U42_B0.098-0.316-0.0921.79216.0710.487
16B_A22:U40_B1.233-0.296-0.2283.1738.85-7.385
18B_A27:U38_B-0.845-0.611-0.2450.4759.461-2.452
13B_C19:G43_B-0.587-0.05-0.1888.996-8.5243.927
110B_C29:G36_B-0.097-0.2690.01610.35529.7349.566
11B_G17:C45_B-1.355-0.827-0.016-0.8470.785-2.191
12B_G18:C44_B-1.394-0.8480.41920.864-13.864-2.02
15B_G21:C41_B-0.363-0.0830.018-6.343-1.0213.72
17B_G26:C39_B0.674-0.14-0.079-8.43917.9736.317
19B_G28:C37_B0.375-0.224-0.3132.46622.094-7.37

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.