2KDQ: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077

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NDB ID: 2KDQ PDB ID: 2KDQ

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	4	B_A20:U42_B	0.098	-0.316	-0.092	1.792	16.07	10.487
1	6	B_A22:U40_B	1.233	-0.296	-0.228	3.173	8.85	-7.385
1	8	B_A27:U38_B	-0.845	-0.611	-0.245	0.475	9.461	-2.452
1	3	B_C19:G43_B	-0.587	-0.05	-0.188	8.996	-8.524	3.927
1	10	B_C29:G36_B	-0.097	-0.269	0.016	10.355	29.734	9.566
1	1	B_G17:C45_B	-1.355	-0.827	-0.016	-0.847	0.785	-2.191
1	2	B_G18:C44_B	-1.394	-0.848	0.419	20.864	-13.864	-2.02
1	5	B_G21:C41_B	-0.363	-0.083	0.018	-6.343	-1.021	3.72
1	7	B_G26:C39_B	0.674	-0.14	-0.079	-8.439	17.973	6.317
1	9	B_G28:C37_B	0.375	-0.224	-0.313	2.466	22.094	-7.37

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.