2KEZ: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082

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NDB ID: 2KEZ PDB ID: 2KEZ

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	5	A_C5:G20_A	0.424	-0.161	-0.318	4.214	-15.271	1.086
1	6	A_C6:U19_A	0.473	-1.513	-0.18	7.304	-14.931	6.994
1	7	A_C7:G17_A	-0.112	-0.047	-0.272	15.466	-19.473	0.22
1	8	A_C8:G16_A	-0.045	-0.129	-0.461	4.206	-23.563	4.208
1	1	A_G1:C24_A	-0.195	-0.205	-0.567	-6.421	16.577	-5.647
1	2	A_G2:C23_A	-0.44	-0.162	-0.294	-8.007	-22.301	2.645
1	10	A_G10:A14_A	5.829	-4.029	-2.124	2.886	14.913	7.014
1	3	A_U3:A22_A	0.134	-0.056	-0.347	-10.508	-21.984	4.709
1	4	A_U4:A21_A	0.03	-0.087	-0.516	-2.197	-18.096	-0.823
1	9	A_U9:A15_A	-0.324	-0.16	-0.735	-1.838	-8.161	11.915

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.