2KF0: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077

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NDB ID: 2KF0 PDB ID: 2KF0

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	5	A_C5:G20_A	0.526	-0.182	-0.247	8.897	-16.333	0.171
1	6	A_C6:A18_A	-2.11	0.364	-0.805	14.714	-24.551	2.997
1	7	A_C7:G17_A	0.055	-0.047	-0.463	23.319	-27.91	1.416
1	8	A_C8:G16_A	0.037	-0.15	-0.452	2.187	-24.733	3.987
1	1	A_G1:C24_A	-0.425	-0.192	-0.551	-15.481	8.256	-3.899
1	2	A_G2:C23_A	0.01	-0.05	-0.356	-11.081	-14.02	0.524
1	10	A_G10:A14_A	5.864	-4.109	-1.989	-4.543	5.993	7.898
1	3	A_U3:A22_A	-0.016	-0.055	-0.282	-7.164	-14.135	0.112
1	4	A_U4:A21_A	-0.039	-0.029	-0.443	8.368	-12.166	-2.146
1	9	A_U9:A15_A	-0.537	-0.117	-0.704	5.479	-15.593	10.381

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.