2KF0: Base Pair Morphology Step Parameters

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NDB ID: 2KF0 PDB ID: 2KF0

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	5	AA_C5C6:A18G20_AA	2.954	-1.698	4.727	-11.729	10.785	36.949	-4.012	-5.976	3.093	16.129	17.541	40.128
1	6	AA_C6C7:G17A18_AA	0.003	-1.012	3.525	-1.262	2.715	38.004	-1.915	-0.176	3.445	4.162	1.935	38.117
1	7	AA_C7C8:G16G17_AA	-0.903	-1.373	3.906	0.33	29.028	26.474	-5.655	1.391	1.665	48.506	-0.551	39.096
1	8	AA_C8U9:A15G16_AA	0.367	-0.917	3.563	-3.664	15.425	23.106	-5.574	-1.632	2.408	33.867	8.043	27.961
1	1	AA_G1G2:C23C24_AA	0.028	-1.825	3.536	1.29	0.936	33.652	-3.312	0.178	3.484	1.615	-2.226	33.689
1	2	AA_G2U3:A22C23_AA	-0.17	-1.853	3.269	0.997	6.053	30.154	-4.613	0.505	2.845	11.486	-1.891	30.758
1	3	AA_U3U4:A21A22_AA	0.08	-1.501	3.103	4.012	8.543	27.276	-4.699	0.631	2.513	17.466	-8.202	28.834
1	4	AA_U4C5:G20A21_AA	0.408	-1.124	3.51	1.632	13.401	28.061	-4.678	-0.447	2.723	25.83	-3.146	31.081
1	9	AA_U9G10:A14A15_AA	-0.003	1.195	4.641	6.483	17.135	60.398	0.013	0.432	4.771	16.624	-6.29	62.863

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.