A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: 2KHY  PDB ID: 2KHY 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14A_A4:U35_A-0.828-0.008-1.093-17.093-16.197-6.544
17A_A10:A28_A-3.7255.2560.456-15.884-26.616-171.296
19A_A13:G26_A-6.43-3.660.0464.058-5.786-2.813
112A_A16:U23_A-0.3670.3560.23120.485-11.256-30.673
16A_C6:G33_A0.926-0.0330.369-2.9898.4548.543
113A_C17:G22_A1.115-0.619-1.16827.529-11.998-23.449
11A_G1:C38_A-0.715-0.031.84252.044.978-9.016
12A_G2:U37_A-3.972-1.2130.81518.0697.979-4.268
13A_G3:C36_A-0.92-0.1630.2913.2-2.449-0.67
110A_G14:C25_A-0.795-0.024-0.761-13.168-14.2929.677
111A_G15:C24_A-0.284-0.0140.0246.896-9.755-10.977
15A_U5:A34_A-1.5860.052-0.2193.575-12.696-22.223
18A_U12:A27_A3.805-1.121-0.469-6.265-25.718-91.921

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.