2KHY: Base Pair Morphology Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: 2KHY PDB ID: 2KHY

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	4	A_A4:U35_A	-0.828	-0.008	-1.093	-17.093	-16.197	-6.544
1	7	A_A10:A28_A	-3.725	5.256	0.456	-15.884	-26.616	-171.296
1	9	A_A13:G26_A	-6.43	-3.66	0.046	4.058	-5.786	-2.813
1	12	A_A16:U23_A	-0.367	0.356	0.231	20.485	-11.256	-30.673
1	6	A_C6:G33_A	0.926	-0.033	0.369	-2.989	8.454	8.543
1	13	A_C17:G22_A	1.115	-0.619	-1.168	27.529	-11.998	-23.449
1	1	A_G1:C38_A	-0.715	-0.03	1.842	52.04	4.978	-9.016
1	2	A_G2:U37_A	-3.972	-1.213	0.815	18.069	7.979	-4.268
1	3	A_G3:C36_A	-0.92	-0.163	0.29	13.2	-2.449	-0.67
1	10	A_G14:C25_A	-0.795	-0.024	-0.761	-13.168	-14.292	9.677
1	11	A_G15:C24_A	-0.284	-0.014	0.024	6.896	-9.755	-10.977
1	5	A_U5:A34_A	-1.586	0.052	-0.219	3.575	-12.696	-22.223
1	8	A_U12:A27_A	3.805	-1.121	-0.469	-6.265	-25.718	-91.921

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.