A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
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NDB ID: 2KPC  PDB ID: 2KPC 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13A_A3:U15_A0.185-0.381-0.282-6.2983.156-6.576
16A_A6:U12_A0.735-0.632-1.6492.618.019-0.054
15A_C5:G13_A0.302-0.556-0.246-4.538-7.44-0.598
17A_C7:U11_A-0.306-1.189-1.11338.484.0257.112
12A_G2:C16_A-0.118-0.4720.326-4.46418.1091.189
14A_G4:C14_A0.004-0.285-0.095-2.4941.3176.046
11A_U1:A17_A0.22-0.659-0.968-32.3238.0714.374

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.