2KPC: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077

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NDB ID: 2KPC PDB ID: 2KPC

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	A_A3:U15_A	0.185	-0.381	-0.282	-6.298	3.156	-6.576
1	6	A_A6:U12_A	0.735	-0.632	-1.649	2.6	18.019	-0.054
1	5	A_C5:G13_A	0.302	-0.556	-0.246	-4.538	-7.44	-0.598
1	7	A_C7:U11_A	-0.306	-1.189	-1.113	38.48	4.025	7.112
1	2	A_G2:C16_A	-0.118	-0.472	0.326	-4.464	18.109	1.189
1	4	A_G4:C14_A	0.004	-0.285	-0.095	-2.494	1.317	6.046
1	1	A_U1:A17_A	0.22	-0.659	-0.968	-32.323	8.071	4.374

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.