2KPV: Base Pair Morphology Parameters

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As of 11-May-2022 number of released structures: 12077

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NDB ID: 2KPV PDB ID: 2KPV

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	A_A3:U32_A	-0.649	-0.1	0.029	-5.682	-4.871	7.462
1	7	A_A7:U27_A	0.116	-0.039	0.136	-2.855	-8.139	0.56
1	9	A_A10:U24_A	-0.256	0.256	-1.261	-13.842	-4.523	26.296
1	13	A_C14:G19_A	0.514	-0.188	-0.069	8.299	4.8	-1.513
1	1	A_G1:C34_A	-0.635	-0.26	-0.465	-14.003	7.909	-3.772
1	2	A_G2:C33_A	-0.464	-0.016	-0.024	-9.203	-1.124	3.176
1	4	A_G4:C31_A	-0.357	-0.161	0.033	-0.887	-5.161	-2.741
1	5	A_G5:C29_A	0.028	-0.12	-0.77	-25.737	-23.76	0.712
1	8	A_G8:C26_A	-0.037	-0.089	0.186	3.946	-19.65	2.222
1	10	A_G11:C22_A	-0.054	0.06	0.084	-11.937	1.919	2.944
1	11	A_G12:C21_A	0.195	-0.182	0.511	5.976	-5.447	-3.669
1	14	A_G15:A18_A	7.491	-5.321	-0.193	45.826	10.505	-48.004
1	6	A_U6:A28_A	0.082	-0.067	0.013	-11.897	-9.832	-0.614
1	12	A_U13:A20_A	-0.093	0.008	0.089	-5.326	-12.755	4.576

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.