A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
Search for released structures

NDB ID: 2KPV  PDB ID: 2KPV 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13A_A3:U32_A-0.649-0.10.029-5.682-4.8717.462
17A_A7:U27_A0.116-0.0390.136-2.855-8.1390.56
19A_A10:U24_A-0.2560.256-1.261-13.842-4.52326.296
113A_C14:G19_A0.514-0.188-0.0698.2994.8-1.513
11A_G1:C34_A-0.635-0.26-0.465-14.0037.909-3.772
12A_G2:C33_A-0.464-0.016-0.024-9.203-1.1243.176
14A_G4:C31_A-0.357-0.1610.033-0.887-5.161-2.741
15A_G5:C29_A0.028-0.12-0.77-25.737-23.760.712
18A_G8:C26_A-0.037-0.0890.1863.946-19.652.222
110A_G11:C22_A-0.0540.060.084-11.9371.9192.944
111A_G12:C21_A0.195-0.1820.5115.976-5.447-3.669
114A_G15:A18_A7.491-5.321-0.19345.82610.505-48.004
16A_U6:A28_A0.082-0.0670.013-11.897-9.832-0.614
112A_U13:A20_A-0.0930.0080.089-5.326-12.7554.576

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.