2KPV: Base Pair Morphology Step Parameters

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NDB ID: 2KPV PDB ID: 2KPV

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	3	AA_A3G4:C31U32_AA	-0.474	-2.058	3.058	0.378	0.203	33.362	-3.616	0.884	3.04	0.353	-0.658	33.364
1	7	AA_A7G8:C26U27_AA	-0.597	-1.91	3.185	-3.86	7.094	24.124	-6.191	0.35	2.589	16.395	8.921	25.421
1	8	AA_A10G11:C22U24_AA	2.104	-0.964	3.18	-1.405	2.718	55.001	-1.196	-2.355	3.083	2.94	1.52	55.08
1	12	AA_C14G15:A18G19_AA	-2.236	-1.502	2.754	5.745	-1.228	53.54	-1.597	2.76	2.55	-1.359	-6.355	53.837
1	1	AA_G1G2:C33C34_AA	1.56	-1.393	3.294	0.059	6.941	31.071	-3.761	-2.835	2.926	12.759	-0.109	31.819
1	2	AA_G2A3:U32C33_AA	0.568	-2.271	3.125	-0.035	3.306	26.72	-5.652	-1.228	2.828	7.118	0.075	26.92
1	4	AA_G4G5:C29C31_AA	1.27	-0.966	3.997	4.902	22.4	51.701	-2.545	-1.015	3.442	24.369	-5.333	56.236
1	5	AA_G5U6:A28C29_AA	0.454	-0.869	2.867	-5.087	3.533	32.549	-2.032	-1.526	2.661	6.233	8.974	33.118
1	9	AA_G11G12:C21C22_AA	-0.176	-1.586	2.769	-3.856	6.111	29.023	-4.09	-0.3	2.395	11.961	7.547	29.89
1	10	AA_G12U13:A20C21_AA	-0.241	-2.079	3.46	1.211	5.563	34.378	-4.325	0.589	3.086	9.332	-2.032	34.832
1	6	AA_U6A7:U27A28_AA	0.107	-1.17	3.014	-0.527	7.463	29.466	-3.548	-0.297	2.643	14.382	1.015	30.38
1	11	AA_U13C14:G19A20_AA	-0.648	-1.767	2.952	-1.615	6.357	29.559	-4.481	0.963	2.556	12.27	3.118	30.263

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.