2KRV: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082

Search for released structures

NDB ID: 2KRV PDB ID: 2KRV

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	A_C1:G17_A	0.092	-0.162	0.609	-4.563	-5.841	-3.356
1	3	A_C3:G15_A	0.773	-0.235	-0.338	25.203	-12.216	-1.799
1	4	A_G4:C14_A	-0.374	-0.165	-0.345	10.083	2.004	-1.362
1	5	A_G5:C13_A	-0.197	-0.167	0.033	-10.681	-22.053	-2.686
1	2	A_U2:A16_A	-0.33	-0.025	-0.221	8.287	-20.093	-2.097

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.