2KTZ: Base Pair Morphology Parameters

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As of 11-May-2022 number of released structures: 12077

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NDB ID: 2KTZ PDB ID: 2KTZ

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	A_A3:U36_A	0.031	-0.051	0.532	3.564	2.06	2.364
1	6	A_A6:U9_A	3.212	0.805	-2.075	5.289	49.525	92.937
1	7	A_C11:G33_A	0.326	-0.134	-0.262	-3.988	-5.124	-1.887
1	11	A_C15:G28_A	0.472	-0.154	-0.189	8.368	-2.553	-0.908
1	14	A_C18:G25_A	0.347	-0.136	-0.272	-3.276	-8.176	1.635
1	15	A_C19:G24_A	0.59	-0.203	-0.042	-4.026	9.754	-1.598
1	1	A_G1:C38_A	-0.394	-0.089	-0.894	-28.418	-2.923	-0.73
1	2	A_G2:C37_A	-0.306	-0.056	-0.511	-19.566	-8.29	0.103
1	4	A_G4:C35_A	-0.431	-0.147	-0.042	10.702	-11.823	1.126
1	5	A_G5:C34_A	-0.32	-0.073	0.138	14.985	6.274	-0.941
1	9	A_G13:C31_A	-0.502	-0.173	-0.023	-2.891	-16.247	0.613
1	8	A_U12:A32_A	-0.232	-0.017	0.268	-2.463	-4.66	1.803
1	10	A_U14:G30_A	2.219	-0.411	-0.087	3.299	-9.773	0.445
1	12	A_U16:C27_A	-0.448	-1.608	0.076	14.111	-20.032	10.621
1	13	A_U17:U26_A	-2.505	-1.786	-0.04	0.138	-15.018	10.157
1	16	A_U20:G23_A	1.536	-4.801	0.544	1.807	0.345	-91.203

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.