2KTZ: Base Pair Morphology Step Parameters

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NDB ID: 2KTZ PDB ID: 2KTZ

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	3	AA_A3G4:C35U36_AA	-0.323	-1.776	3.19	4.829	0.536	27.853	-3.756	1.74	3.058	1.103	-9.935	28.266
1	6	AA_C11U12:A32G33_AA	0.024	-2.209	3.213	-4.403	9.041	24.226	-6.989	-1.082	2.22	20.452	9.96	26.201
1	10	AA_C15U16:C27G28_AA	0.74	-1.34	2.947	-3.634	15.566	26.292	-4.923	-1.956	1.779	30.858	7.203	30.696
1	13	AA_C18C19:G24G25_AA	-0.215	-2.052	3.34	-0.284	8.298	27.205	-5.953	0.378	2.615	17.142	0.586	28.421
1	14	AA_C19U20:G23G24_AA	0.57	-1.904	3.073	2.582	8.162	101.193	-1.343	-0.332	2.967	5.275	-1.669	101.455
1	1	AA_G1G2:C37C38_AA	0.758	-1.088	3.26	-1.143	10.363	29.115	-3.93	-1.632	2.693	19.83	2.187	30.887
1	2	AA_G2A3:U36C37_AA	0.234	-1.533	2.768	-7.401	-1.932	29.953	-2.558	-1.665	2.724	-3.663	14.033	30.893
1	4	AA_G4G5:C34C35_AA	-0.38	-1.947	2.981	-9.487	7.312	34.03	-4.051	-0.557	2.535	12.041	15.622	36.017
1	5	AA_G5A6:U9C34_AA	-5.852	-0.935	4.523	-75.228	118.255	36.667	-3.096	1.437	3.722	70.449	44.816	142.257
1	8	AA_G13U14:G30C31_AA	0.044	-1.17	3.181	-0.513	1.8	46.273	-1.635	-0.097	3.135	2.29	0.652	46.308
1	7	AA_U12G13:C31A32_AA	-0.356	-1.677	3.181	-0.096	8.644	30.674	-4.483	0.634	2.624	15.947	0.177	31.841
1	9	AA_U14C15:G28G30_AA	0.796	-1.804	3.166	-0.974	2.921	29.797	-4.056	-1.728	2.953	5.661	1.888	29.952
1	11	AA_U16U17:U26C27_AA	0.353	-1.682	3.315	-2.138	16.529	32.793	-4.703	-0.824	2.217	27.198	3.518	36.682
1	12	AA_U17C18:G25U26_AA	-0.424	-1.125	3.347	1.037	6.045	44.925	-1.996	0.642	3.168	7.867	-1.349	45.32

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.