2KUR: Base Pair Morphology Parameters

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NDB ID: 2KUR PDB ID: 2KUR

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	7	A_A7:U42_A	0.532	-0.094	-0.312	-3.2	-3.77	5.146
1	12	A_A12:U36_A	2.13	0.041	-0.221	-2.396	-1.421	-16.859
1	15	A_A15:U32_A	-0.261	-0.219	-0.313	2.804	-1.048	-0.27
1	18	A_A18:U29_A	-0.304	-0.213	-0.162	-1.936	-3.542	0.8
1	19	A_A19:U28_A	0.905	-0.183	-0.226	2.871	-8.256	-3.92
1	20	A_A20:C27_A	-1.332	-0.652	-1.785	-2.572	-14.463	29.556
1	3	A_C3:G46_A	-0.386	-0.195	0.011	0.511	-6.204	-1.368
1	1	A_G1:C48_A	-0.416	-0.306	-0.219	-7.25	3.445	-5.498
1	2	A_G2:C47_A	0.302	-0.156	-0.206	-3.766	-5.553	2.028
1	6	A_G6:U43_A	-2.571	0.425	-1.217	-24.019	3.226	26.494
1	10	A_G10:C38_A	0.51	-0.172	-0.153	-2.098	-0.896	-0.948
1	4	A_U4:A45_A	0.183	-0.029	-0.291	2.769	1.308	12.035
1	5	A_U5:A44_A	0.653	-0.248	-0.079	5.901	3.323	4.762
1	8	A_U8:A41_A	-0.13	0.087	-0.236	6.717	-5.489	18.682
1	9	A_U9:A40_A	1.012	-0.096	-0.024	2.924	-1.737	19.399
1	11	A_U11:A37_A	-0.421	-0.141	-0.105	-3.114	-5.16	-6.938
1	13	A_U13:A34_A	-0.205	-0.055	0.004	1.811	-6.011	3.276
1	14	A_U14:A33_A	-0.341	-0.098	-0.036	0.661	-2.598	3.787
1	16	A_U16:A31_A	-0.516	-0.092	-0.536	9.174	-6.193	7.499
1	17	A_U17:A30_A	0.236	-0.142	-0.142	3.223	-2.548	4.921
1	21	A_U21:U26_A	1.869	-0.988	0.393	16.261	-25.757	43.146

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.