A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: 2KUR  PDB ID: 2KUR 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
17A_A7:U42_A0.532-0.094-0.312-3.2-3.775.146
112A_A12:U36_A2.130.041-0.221-2.396-1.421-16.859
115A_A15:U32_A-0.261-0.219-0.3132.804-1.048-0.27
118A_A18:U29_A-0.304-0.213-0.162-1.936-3.5420.8
119A_A19:U28_A0.905-0.183-0.2262.871-8.256-3.92
120A_A20:C27_A-1.332-0.652-1.785-2.572-14.46329.556
13A_C3:G46_A-0.386-0.1950.0110.511-6.204-1.368
11A_G1:C48_A-0.416-0.306-0.219-7.253.445-5.498
12A_G2:C47_A0.302-0.156-0.206-3.766-5.5532.028
16A_G6:U43_A-2.5710.425-1.217-24.0193.22626.494
110A_G10:C38_A0.51-0.172-0.153-2.098-0.896-0.948
14A_U4:A45_A0.183-0.029-0.2912.7691.30812.035
15A_U5:A44_A0.653-0.248-0.0795.9013.3234.762
18A_U8:A41_A-0.130.087-0.2366.717-5.48918.682
19A_U9:A40_A1.012-0.096-0.0242.924-1.73719.399
111A_U11:A37_A-0.421-0.141-0.105-3.114-5.16-6.938
113A_U13:A34_A-0.205-0.0550.0041.811-6.0113.276
114A_U14:A33_A-0.341-0.098-0.0360.661-2.5983.787
116A_U16:A31_A-0.516-0.092-0.5369.174-6.1937.499
117A_U17:A30_A0.236-0.142-0.1423.223-2.5484.921
121A_U21:U26_A1.869-0.9880.39316.261-25.75743.146

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.