2KUR: Base Pair Morphology Step Parameters

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NDB ID: 2KUR PDB ID: 2KUR

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	7	AA_A7U8:A41U42_AA	0.905	-0.385	3.732	0.919	-5.736	32.811	0.431	-1.402	3.766	-10.056	-1.611	33.307
1	12	AA_A12U13:A34U36_AA	2.878	-1.848	3.175	-2.074	10.441	38.355	-3.783	-4.444	2.456	15.53	3.085	39.752
1	15	AA_A15U16:A31U32_AA	-0.07	-1.244	3.35	-0.026	-0.304	32.807	-2.148	0.119	3.361	-0.538	0.045	32.809
1	18	AA_A18A19:U28U29_AA	-0.276	-1.045	3.219	1.342	10.055	37.794	-2.705	0.565	2.848	15.19	-2.028	39.084
1	19	AA_A19A20:C27U28_AA	1.524	-0.087	3.884	9.444	6.98	23.698	-2.559	-0.13	4.005	15.813	-21.395	26.411
1	20	AA_A20U21:U26C27_AA	1.406	1.376	2.351	-11.87	16.024	46.409	0.768	-2.285	2.281	19.322	14.312	50.294
1	3	AA_C3U4:A45G46_AA	1.607	-0.416	3.665	1.394	3.08	37.166	-1.108	-2.305	3.676	4.821	-2.182	37.314
1	1	AA_G1G2:C47C48_AA	0.321	-1.188	3.207	-0.128	4.535	43.446	-2.015	-0.443	3.073	6.106	0.172	43.67
1	2	AA_G2C3:G46C47_AA	-0.824	-0.98	3.082	-2.813	8.491	35.584	-2.627	0.956	2.837	13.629	4.515	36.656
1	6	AA_G6A7:U42U43_AA	-1.962	0.011	3.026	-2.477	3.637	41.098	-0.352	2.529	3.124	5.163	3.516	41.322
1	10	AA_G10U11:A37C38_AA	-0.164	-1.357	3.736	1.316	-3.76	34.665	-1.601	0.506	3.849	-6.284	-2.199	34.887
1	4	AA_U4U5:A44A45_AA	-0.687	-1.598	3.417	-0.445	1.866	32.552	-3.181	1.143	3.332	3.325	0.793	32.607
1	5	AA_U5G6:U43A44_AA	2.859	-1.818	3.805	7.569	21.904	18.975	-8.373	-3.872	1.831	48.396	-16.724	29.87
1	8	AA_U8U9:A40A41_AA	0.217	-0.138	3.502	-1.395	21.723	34.404	-2.793	-0.479	2.911	32.962	2.117	40.535
1	9	AA_U9G10:C38A40_AA	-0.015	-1.221	5.875	-22.823	11.537	43.575	-2.916	-2.905	4.88	14.185	28.062	50.208
1	11	AA_U11A12:U36A37_AA	0.42	-0.626	3.429	4.006	2.377	48.925	-0.941	-0.19	3.42	2.863	-4.825	49.133
1	13	AA_U13U14:A33A34_AA	-0.311	-0.504	3.657	-1.479	11.197	38.494	-2.146	0.268	3.395	16.553	2.187	40.057
1	14	AA_U14A15:U32A33_AA	0.479	-0.869	3.565	2.108	1.385	32.874	-1.787	-0.454	3.549	2.442	-3.719	32.968
1	16	AA_U16U17:A30A31_AA	0.376	-0.883	3.587	-1.862	9.703	41.411	-2.264	-0.72	3.289	13.491	2.589	42.523
1	17	AA_U17A18:U29A30_AA	-0.838	-1.693	3.306	0.141	6.495	27.831	-4.837	1.73	2.841	13.275	-0.287	28.565

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.