A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-May-2022 number of released structures: 12082
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NDB ID: 2KUV  PDB ID: 2KUV 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
17A_A7:U42_A-0.4170.006-0.134-1.349-1.55717.089
112A_A12:U36_A-1.1790.423-0.3821.8563.82630.368
118A_A18:U29_A-0.387-0.236-0.285-4.34-7.658-1.557
119A_A19:U28_A-0.612-0.313-0.1041.532-4.3930.87
120A_A20:C27_A0.91-0.755-2.04-10.803-13.46922.39
13A_C3:G46_A-0.404-0.203-0.0680.258-3.629-2.6
15A_C5:G44_A-0.317-0.206-0.192-4.535-1.199-1.114
11A_G1:C48_A-0.914-0.49-0.281-8.359-0.127-4.196
12A_G2:C47_A0.39-0.196-0.193-2.209-1.683-4.439
16A_G6:C43_A0.362-0.204-0.1261.469-6.584-2.876
110A_G10:C38_A0.431-0.195-0.526-12.342-3.636-4.841
14A_U4:A45_A-0.41-0.124-0.112-0.807-4.688-1.053
18A_U8:A41_A-0.2220.0180.0440.54-4.46313.351
19A_U9:A40_A1.048-0.111-0.047-0.355.40619.649
111A_U11:A37_A0.666-0.242-0.1551.439-3.4654.664
113A_U13:A34_A0.251-0.175-0.1063.994-3.391-2.425
114A_U14:A33_A0.529-0.067-0.130.802-2.87213.966
115A_U15:A32_A0.24-0.088-0.1210.238-3.7678.139
116A_U16:A31_A0.1790.072-0.2910.125-3.6221.49
117A_U17:A30_A0.231-0.093-0.2144.318-0.6968.17
121A_U21:U26_A3.014-1.082-0.43516.849-19.71551.575

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.